Ceratina calcarata (carpenter bee): 108622976
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Entry
108622976 CDS
T06061
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03013
Nucleocytoplasmic transport
ccal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108622976
03015 mRNA surveillance pathway
108622976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108622976
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108622976
mRNA cycle factors
P-body specific factors
108622976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108622976
NCBI-ProteinID:
XP_017876680
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MTMTEETQQSETAAQNEAQTSSPDVGKVKDSKKEKCRPMTKVVIRRLPPTMTQEQFLEQV
SPLPEHDYLYFVKADMSMGQYAFSRAYINFVEQQDIFMFREKFDNYVFVDSKGTEYPAVV
EFAPFQRLPKKRVGKKKDLKCGTIESDPYYISFLESLKNQEAESNVSQPKTEYSYQPPDN
TPKKVTTTPLLEYVKQRKQEKQRQRDEKRDERRRRDLERRRTKEDPIISKVLKNPDLDKE
ICKDNKENREEKDKFAPKDIKNRIKKEDKLREKIPRDRDSKSLIKTYRERIEDRNKDRDI
KHPRRHEDKKIYGRRDERDGVKDDRRFDGKDDRKYDFKEDKESRERKLEEKRGKSYEKMR
QEKKRLAETKKQNVETSVDTENTVKLRGDEEEFQKKESQADSYENIKERDEPLGNKDDAN
INKGRESQEINDKKVLIEESVQNLGMKEQRTDIKTFESHKDIEKSKSHENINKKDESEDK
KDSKFTKRRSSLESGGEGGTGDGNCLRRHKSLDGGNQNNLQKTEIEDKEKDKKDPRLERR
IRNKDRPAMEIYRPGMGKFSKQRLEREKSSTNDERASLSQSPTPNPNANSVSKSGKPGTE
VRSMTFKRSVSRDLV
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgaccgaggaaacacaacaatctgagacagccgcacaaaatgaggcacaaact
agttctccagacgttggaaaagttaaagacagtaaaaaagagaaatgccgaccaatgaca
aaggtggtaataagaagactacctccaactatgacccaagagcaattcctagaacaagtt
tccccattacctgaacatgattatctttattttgtgaaagctgacatgtccatgggtcaa
tatgctttctcacgggcttatatcaactttgtcgaacagcaagatattttcatgttcaga
gagaaatttgacaattatgtgtttgtggactccaagggaacagaatatccagcagtagta
gaatttgcacctttccaaaggctacccaaaaagagagtaggaaaaaagaaggatttgaaa
tgtggtacaatagaatcagatccttattatataagtttcttggaaagtcttaagaatcag
gaagctgaatctaatgtatcacagccaaagacagaatattcctatcaaccacctgacaat
acaccaaaaaaagtaacaaccacacctcttctggagtatgtgaaacaacgtaaacaagaa
aaacagcgtcagagagatgagaaacgtgatgagagacgacgaagagatttagaaaggcga
aggacaaaggaagatcctataatatctaaggtattgaaaaatccagatcttgataaagaa
atatgtaaagataataaagagaatagggaagagaaggataaatttgcaccgaaagacatt
aaaaatcgtattaaaaaggaagataaattgcgcgagaagataccccgtgatcgagattcc
aaatcgttaataaagacgtacagagaaagaattgaagataggaataaggaccgagacatt
aaacatccaagacggcacgaggataagaagatatacgggaggcgagatgaaagggatggt
gtaaaagatgatagaagatttgatggaaaagatgataggaagtatgactttaaagaagac
aaagagtcgagggaacgaaagctagaagagaaacgaggtaaaagttatgagaaaatgagg
caagaaaagaaaagacttgcggaaaccaaaaaacaaaacgtagaaactagtgtcgatact
gaaaatactgtcaaattaagaggcgacgaggaggagtttcaaaagaaggaatctcaagcc
gattcgtatgaaaacattaaagaaagggatgaacctttgggcaataaggatgatgcgaac
attaataagggaagagagagtcaagagattaatgacaagaaagtcttgatagaagaatct
gtacaaaatctaggaatgaaagaacagagaacagatataaaaactttcgagagccacaaa
gatatcgagaagtcaaaatctcatgaaaatattaataaaaaggatgaatctgaagacaag
aaggattcgaaatttacgaagcgacgtagctcgcttgagagcggaggagaaggtgggacg
ggagacggaaattgtttaagaaggcacaaatctttggatggggggaatcaaaataattta
caaaagactgagattgaagataaagagaaggataaaaaagatccacggctagaacgtagg
attagaaacaaggatcgcccagccatggagatttatcgacctggtatgggaaagtttagt
aagcagagattagaacgagaaaaatctagtactaacgatgaacgagcatcgctttcgcaa
agtcctactccgaaccctaatgctaacagtgtttcgaaatcgggtaaacctggaacagaa
gtacgttctatgacgtttaaacgtagcgttagccgcgatttggtataa
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