Ceratina calcarata (carpenter bee): 108623407
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Entry
108623407 CDS
T06061
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108623407
03009 Ribosome biogenesis [BR:
ccal03009
]
108623407
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108623407
Spliceosome [BR:
ccal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108623407
Ribosome biogenesis [BR:
ccal03009
]
Eukaryotic type
Pre-60S particles
Helicases
108623407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
PRK
AAA_22
Motif
Other DBs
NCBI-GeneID:
108623407
NCBI-ProteinID:
XP_017877361
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MDNNCDLIKTIADDQEVPDFSENSDIEDDFQPRKQKKRENRDFDSSFKFVNDVSDYNKDT
WNDLSKYIKRKAKSKLDDKIKKIRKGVENEFQNEVDDDSTTDVLGIKKEDDEISLSEDEL
KKDIFKTKERKVKKKKVVEENDEEIIDFEEYSNTETHATFYQMNLSRPLLKAIGTMNFVH
PTPIQAATIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLDGPAISRVLVLVPTR
ELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKVQEAVLRKNPDIVIATPGRLIDHLKNTPT
FSLESIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQTILFSATMTEEVKDLAAVSLDK
PVRVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICRTFHDHVMVFVQTKKQAHRL
HILLGLLGVKVGELHGNLTQPQRLENLAKFKNEEIDVLLATDVAARGLDISGVKTVINFV
MPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKEIIKNAKNPVKNRIIPPDIVEKY
NKKLESLEPDVETILDEERNERELAKLENRTNRAERILKDENSKGIQRTWFQSQKERKEE
KEKLLLTEKQPKTNKVKKEHNRKPPNVVEEKKKKPKGPKKETAEDRANRELDKIAAYQAR
LAKKSNKQKKIRTVVEDNRSMMNGRGATKRPRSSFAADLTNTNQKAVKKMRYDANVKKNQ
SKRRTAKFSSGKKDNRATFRKR
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggataataattgtgatttaataaagacgatcgcagatgaccaggaagtgccagacttc
tctgagaattctgacatagaagatgattttcagcctaggaagcaaaagaaacgagagaac
agagacttcgatagtagctttaaattcgtaaatgatgtctctgactacaataaagacaca
tggaacgatttgagcaagtatataaaacggaaagcgaaatcgaagcttgatgataaaatt
aagaaaatcaggaaaggagttgaaaacgagtttcaaaatgaagtagacgatgattctact
acagatgtgttaggaatcaagaaagaagatgatgaaatatctttgtcagaagatgaactc
aagaaagacatatttaaaacaaaggagaggaaggttaaaaagaaaaaagtagtggaagaa
aatgatgaggaaataatcgactttgaagagtactcaaacacagaaacccatgcaacattt
taccaaatgaatttatcgcgtcctttattaaaggctattggaactatgaactttgtgcat
ccgacgcctatacaagctgccactattcccgttgcattattgggtcgcgatatatgtggc
tgcgccgcgacaggtaccgggaaaactgctgcctatatgttaccaactctggaaagatta
ttgtacaggccattagacggtcctgctatctctcgtgttctcgtacttgtcccaacaaga
gaactgggtgtacaagtgtatcaagttacaaaacagctatctcaattcacaacaatcgaa
gtgggattgtcagtcggtggtctggacgtgaaagttcaagaagctgtattaaggaaaaat
ccagatatcgtgatagccactcccgggagattgattgatcatttaaaaaacactccgacg
ttttcgttagaaagtatcgaagtacttattctagatgaagcagacagaatgttagatgaa
tatttcgcggaacagatgaagtacatagtgaaacagtgttcgagaagcaggcaaacgatc
ttgttctcggctactatgaccgaagaggtgaaggatttggcagccgtgtctttagacaaa
cctgtcagagtatttgtagatagtaatcaagacgttgcatttaatttacgtcaggaattt
attcggatacgaaaggagcgggaaggagatcgagaagcgatcctggctgctttaatttgt
cgaactttccacgatcacgttatggtcttcgtccaaaccaaaaaacaagctcacagatta
catatcttattaggcttgttaggtgtaaaggtcggagaacttcacggaaatctcacgcaa
ccgcagcgtctagaaaatttagcgaaattcaaaaatgaggagatagacgttttattagca
acggacgtcgccgcgagaggcttagatattagcggagtgaaaactgtgattaattttgta
atgccagctactatgcagcattatattcacagagttggaaggaccgctagagctggtcgc
gtcggagtgtctgtatcactggctggggaacaagaacgttcactagtcaaagagattatt
aaaaatgcgaaaaatccggtaaagaatcgaataatacctcccgacatagtcgagaagtat
aataagaagttagagtctctcgaaccagatgtggaaacaattttagatgaagaaagaaac
gagagggaattagctaaactggaaaatcgaacgaatcgtgccgagagaatactaaaagat
gagaatagtaaaggcattcaaagaacttggttccaaagtcagaaagaaaggaaggaagag
aaagaaaaactactgttaacggaaaaacaaccgaagacaaataaagtaaagaaagaacat
aacagaaaacccccaaacgtagttgaagagaaaaagaaaaagccgaagggacctaagaag
gaaactgctgaagatcgagctaacagggaattggacaaaattgcagcgtatcaagcgaga
ttagctaaaaagagtaataaacagaagaagattcgaacggtcgtagaggataatcgatct
atgatgaatggaagaggagcgacgaaacggccgagatcttcatttgccgctgatctgaca
aacacgaatcaaaaggctgtgaagaaaatgcgttacgacgcaaacgttaaaaagaatcaa
tccaaaagaaggactgctaagttttccagcggaaagaaggacaacagagcaacttttaga
aaacgttga
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