Ceratina calcarata (carpenter bee): 108632624
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Entry
108632624 CDS
T06061
Name
(RefSeq) uncharacterized protein LOC108632624 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108632624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108632624
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108632624
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108632624
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108632624
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
108632624
NCBI-ProteinID:
XP_017892801
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAN
KLFSLDVRVQSIDPAWPITAAPTSVSSGSIHVNPRFFSMPQQSATSISQPIVAPVKLPPG
DPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELAA
VTTTTHVTSTTETVTQGKPVTSVPNQTAKQVAKQFPAATASLLKSAGMNNGPRIAPASSI
AVASAKPVSRDPRIKTTSTQDVPATSVDPRQRISTSAQKDSRGEGQTQLAANTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTAMINASNNNNANTNLNNNNNKNFSGNANKDAVS
HRTSQKKDPRLSSNSSGNLNSNSSKSFQILSVGSNSCLPAGNRGSGSNDAKSKDLKSSNS
RGSSSSMIDKSSASSKSSHRKLGNKSRSKQPQTSPSKIAKVDRDASPIRSKSREKDSEDS
SPSSRTSPQSFQTSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNSSLSSSGGVTEEEQSGS
LIVSPPHPPAFKEIRPNTRQRNYVRRNKDDSLSPERSPANAGNVQTAAELTSEASNRDED
LRATLPLPGAPASVSEKKEDLDLRVLPPAVNSNKRQSSEHIESTLNKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNIDDKRDGRDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDRPNRRGRENDKPEKNEDRNIEIIMKQAAE
QLNQGSITKTQYNNLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDLGGSGDRTST
FSPSNDKEMMRNKDHPITRNPNGPRWQNQQWQQPGPWAHPPGPPYGGPQGHFNSDFRPVG
PWQNPRHFGPMRADYQYHGGFNHLGPNPRLGPGMIGPMGANGPLMSNLLSNGPIGPIGMS
NPGISLSGINGPGMMMNNGPMSNLVSNPNMSSLSASRNASPSSSAKYDLEDGDQNYTSTM
LKNQNPHSRELPPPDPKLLDEIARDTMKSINIDSIPREIRYYGQTGVVFMNWDDPREIGF
QDGIRRILIDDKDTVTCAFNDQYKEFMYEGEVHRIKLGAPTRELYIDDRWYECYFGGMPV
TVDIGGKKVSVKLEGPPPHVKIGTVKRTDLVVAKINLIINARNMVPVFLDPKPQIFEIEG
KPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVKIAGM
KGEEPIESSPSPPLLTQKPKVDAASAPTPFSIIEPESTSQDGSDLRSTPKPDLQLDMLSS
ALPSAMAPSSGLSYQAEPVENPAAAAPALSLPLNMNELFQRLVETGMVPNLAEQKKQEVE
ETKEPEITPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDWHFRQ
NRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTADTEGITAEESPQE
ALQPSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYKEKSL
VRALEKSALALEETIEEMEDEKKESSDEMCGEESKGDELNAAETFRSDFETAEPSDEAVD
DNAPEETTEVENKEETAIETNADIEQNQEENEQELETSSVKEDVEMESTDKEKMHTTTET
EVPEAEIVDKSFESIKIKEEPIDEPEEQLEEEHFDFSHVEIKPEPIDPEPEPEESVITEP
AAVDTTHAAVKSSIDGNVELDSTPAAIPAAPSRIKINITKPLCVNKEPEESKEKEKAVVE
APTEEEVVEPLVPASIKPALQGRKLSVLPPVEKGQELSGLCSIM
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaagaaatcgcagatgagtatatctcatcattatccgatctg
acgatcaacagtaagccactcatcaatatgcttactatgctggcagaagacaacatagaa
catgcatcagcgattgtccaagctgtcgagaatcatctgcaaaaggtgaggagtgacata
aaattaccggttctttatttgatcgattcaattgtaaagaacgttaatggagcatattta
aacctgttcacacaaaatattgtgaacactttttgtggagtgtttgaaaaggtcgatgag
aatactagagccagcatgtggaaattgagacaaacttggaatgatgtatttcctgcgaat
aaactattttctctggatgtacgggtgcaaagcatcgatcctgcctggccaatcactgcc
gctcctactagtgtttcttcgggatctattcacgtgaacccccgtttcttctcaatgccc
caacagtcagcaacgtccatctcgcaaccgattgtagcacctgttaagcttccgccaggt
gatccggtgacaccgacggaagcagcgatgcgagaacaattattgaaaaagcaacgggaa
ctaatagaattgcagaagaagaaaattgagttggaattgcttcaagctaaagctaatttg
gagcaacagcaacggcaacttgataagcaagctgggaatttaaaagctgaactggctgct
gttactactacaacgcatgtgacatcaaccacggagaccgtcacgcaaggaaagcctgta
acttctgtgccaaatcaaacagcaaaacaagtagcaaaacagtttccagcagcgactgct
tcgcttttgaaaagtgcaggaatgaacaatggtccacgaattgcgccagctagtagcata
gcagtagcttcagctaaaccagtgtctcgtgatccaagaataaagacaacttcgactcaa
gacgttccagctacaagcgtggatcctcggcagcgaataagtacatcggctcaaaaggat
tcgcgtggtgaaggccaaacgcagctagcggcaaatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgatgataaacgctagtaataacaataatgctaatacg
aacctcaacaataataataataaaaatttcagtggtaacgcaaataaagatgctgtgtcg
catcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaacctaaac
agtaatagttccaaaagttttcaaatcttgtctgtgggtagtaatagttgtttacctgcg
ggtaacagaggaagtggtagtaatgatgctaaatcgaaagatttaaagagttcgaattct
cgaggctcttcgtcttcgatgatcgacaagtcttccgcttcctcaaaatcctcgcacagg
aaattaggtaataaatcgcgatctaagcaacctcagacgtctccgagtaagatagcgaaa
gtcgacagggacgcgagtcctattagatccaaatctcgtgagaaagacagtgaagacagt
tcaccatcctcgcgtacctctcctcagtcctttcaaacttctaaaaaccgaaagaagaat
acgaaatcgagaaaacgcagtccaagccctccgtacagaattcccaggcgtaacgacgca
aagtccaactcaagtcttagcagttccggtggtgtcaccgaggaggaacagtccggttct
ttgatagtctctcctcctcacccacctgcatttaaagaaatacgaccgaatactagacag
agaaattacgtaaggcgtaacaaggatgacagtcttagtccagagcgctctccagcgaat
gctggtaatgttcaaacagctgcggagttaacttcggaagcgtccaacagagatgaagac
ttgagagctacactacctcttccaggtgcacccgcctcggtatccgaaaagaaagaggac
ttagatttgcgtgtattgccgccagcagttaattctaataaacgacaaagttcggagcac
atagaatctacgttgaataagaaaacgaaggctgagaagtttgatgcattatttggaaac
gaagacgttgatttgcgaacgttaactcatcccaaagctggacgacctccgacgccgcct
ccgcctgtaatatccggagaagatggcaaagatggttgggcgaaattgaagacgccgtca
aagaatgatagagaaaaacaggctaataatatcgatgacaagcgagatggtagagatcga
aatagagatagattgggtaggctcaggctttacaataaacttccggatgatcctaaagaa
agacggagaacgttgtcgaatgaagatcaggacagaccgaataggagaggtcgagagaac
gataaacctgagaagaacgaggataggaatattgaaattataatgaaacaagctgccgag
caactgaatcaaggttctattaccaagactcaatacaacaatcttatccaagaagtcttg
cacatgagcgaagacagaaaactaagagccgcgcaaaggaaagaaaaagaagtaggatct
atcgtatgggagaaaggtgtaaatttggatcttggtggttctggagatcgtacgtccacc
ttcagtccttctaacgataaggaaatgatgcgaaataaagatcatcctatcacaaggaat
ccgaatggtcctagatggcagaatcaacaatggcagcaaccaggaccatgggctcatcca
ccggggcctccatacggtggtccgcaagggcattttaattcagatttcagacctgttggt
ccttggcaaaatccaagacacttcggcccgatgcgagccgattatcaatatcacggtggt
tttaatcatcttggtccgaatcctcgcctgggtcctggtatgataggaccgatgggagct
aacgggccgcttatgtcgaatttattatcgaatggtccgatcggcccgatcggcatgtca
aatcctggtatatcattatcgggcataaatggacctggaatgatgatgaacaacgggcca
atgtcgaatcttgtatcaaatccgaatatgtcttcattgagtgcttcgagaaacgcgtcc
ccgagttcatccgcgaagtatgacctcgaagatggtgatcagaattatacgtctacgatg
cttaaaaatcagaatcctcatagccgtgaattgccgccgccagatccaaaactgctggac
gaaatcgcgagagacacaatgaaatctataaatatagacagtataccgcgtgaaattaga
tactacggtcaaactggagtcgtttttatgaactgggacgatccgagagaaattggattt
caagatggtatacgacggattttgattgatgacaaagatacggtaacttgtgcatttaat
gatcaatacaaggagttcatgtatgaaggtgaagttcatagaattaagttaggtgcacca
acgagagagttgtacatcgatgatagatggtacgaatgttatttcggtggtatgcccgta
acagtagatatcggtggtaaaaaagttagtgtgaaattagaagggccaccgcctcatgtt
aaaattggcactgtgaagagaaccgatctggtggttgccaagattaatcttattattaat
gcccgaaacatggttcctgtatttttagacccaaagccccaaatattcgaaatcgaggga
aaacctcatacgttggaattcatagactcgctgcaaacggttcttttgaatgggcgtcca
ttcaaggttgaattcggaggactgcctaagcctatcattgtcagagataaaaaacatttt
ataagattttcggtattgccaagaggtgttcgaccaggatatgttaagatcgcgggtatg
aaaggtgaagaacctattgaatcatcaccgtctccacctctgttgacgcaaaagccgaaa
gtagatgcagcttccgcgccaaccccgttctctatcatcgagcctgaatcgacgtcacag
gatggttcagatctcagatctacgcctaaaccggatttacaattggacatgttatcttcc
gcactgccgtctgcaatggcaccgtcgtctggattatcgtatcaagccgagccagtcgaa
aatccagccgcagctgctccagcgttatcgttaccgttgaatatgaacgaactatttcag
agattagtcgagaccggcatggtgccgaatctcgccgagcaaaagaagcaagaggtagag
gaaacgaaagaaccggagattacccccgtttcgtttgataagccagaaacgcttaaagtt
aaacaaccagcaatcgcggctgcattgtacagtggaatgcagtgtagttcttgcggtgct
agatttgcaccggaattagcgacgcgttatagtcatcatttagattggcattttaggcaa
aataggcgggaaagagattccgcgagaaaggcccattcacgaccttggtactacgatgtt
agcgattggatacagttcgaagagattgaagatttggaagatagagcacaaagttggttc
gaaactgaaaaacagacagccgataccgaaggtatcactgcagaagagtctcctcaagaa
gcattacagccgagtgttccaactggaagtgatgaggattcaagatgtcaagtgtgccac
gatgcatttgaacaattttataatgaggaaaaagaggagtggcatttaaggccagcgatt
aatttcgagggaaagaattatcatccattgtgtctcgacgattacaaggaaaaaagtctt
gtgagagctttggaaaaatctgcgttagcgctcgaagagacaatcgaggaaatggaagat
gaaaagaaggaaagctccgatgaaatgtgcggagaagaaagtaaaggtgatgaattaaat
gctgcggagacatttagatccgattttgaaacagccgaaccatcggacgaagcagtagat
gataatgcaccggaagaaactacagaggtggaaaataaagaggaaactgccattgaaact
aacgcagacattgaacagaatcaggaagagaatgaacaggaactggaaaccagtagcgtt
aaggaggatgtcgaaatggagagtacagataaagagaaaatgcacacgaccactgaaact
gaagtacccgaagcagaaattgtggataaatctttcgaaagtattaaaattaaagaagaa
ccgattgacgaacctgaagagcaattagaagaggaacacttcgacttcagtcatgtagaa
ataaaaccagaacctattgacccggagccagaacccgaggagagcgttataacggaaccc
gcggcggtcgatacgacgcatgctgcagtgaaaagttctatagacggaaacgtagagttg
gattctacacccgcagcgataccagcagcgccttctcgaattaaaattaatattacaaaa
ccgttatgtgttaataaagaaccagaggaatcaaaggaaaaagaaaaagctgtagttgaa
gcgcctaccgaggaagaggtggtagaacctttggtgcctgcttctatcaaacctgcttta
caaggtagaaaactgtcagttttacctcccgtggagaaagggcaagagttatcaggactc
tgctcaattatgtaa
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integrated database retrieval system
