KEGG   Cupriavidus campinensis: M5D45_20855
Entry
M5D45_20855       CDS       T08350                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccam  Cupriavidus campinensis
Pathway
ccam03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    M5D45_20855 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccam03400]
    M5D45_20855 (ligD)
Enzymes [BR:ccam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M5D45_20855 (ligD)
DNA repair and recombination proteins [BR:ccam03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     M5D45_20855 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: URF07639
LinkDB
Position
2:complement(678520..681189)
AA seq 889 aa
MAQPTRATRAADPAPDAAEPLGKYRRKRDFAATPEPSGGKAAKGTKTARKRAAPALSFVV
QKHAARRLHYDFRLELDGTLKSWAVPKGPSYDPADKRMAVHVEDHPLDYANFEGVIPAGH
YGAGTVIVWDRGTWVPDGDPAAAHRAYRDGKLKFELRGEKLKGHWTLVRMRGKRQRDDQR
DDQRDNNGWLLIKERDEYAQAASAFNVVDAMPDSVLAGTARAAKKVAKKAPAKSAKSAAA
KKANARDLPALPEGAKKAKLPLALAPQLATLVEKAPADSSQWQYEIKFDGYRVLARIDGD
DVRLFTRQGNDWTSKLRGLAAEIRTLGLPDGWLDGEIVVVDAQGITDFQALQNAFETSRA
DAIQFYAFDLPYYAGHDLRAVPLDQRRLLLRRLFEANTAPRLHFSESFEASPDEMLAAAC
RMKLEGVIGKRNDAPYVSTRANTWIKLKCTLRQEFVIGGFTDPKGSRSGLGALLLGVHDA
QGKLRYAGNVGTGFDTAMLGTLRKQLDPLVTDAPPFDDLPRGIRGHWVKPKLVAEVSFGA
WTREGRVRHAVFHGLRTDKPAGAVSVEKPAAAAKSAKSAAKKAPARKAPAKETIGKIVVS
HADRVIDTSTGLTKGDLVRYYASAAGLMLPYLKGRPIALVRAPSGVEGEQFFQRHGDTLK
IDGVRPLDPKLWPGHPPLLEIATEAAIVAVAQLNVVEFHTWNAVARSLDKPNRIIFDIDP
GEGVKWPAIQEAAALTKGLLDELGLQSFLKTSGGKGLHVVVPLAPRANWGWEPVRDFAQA
VVQHMAATIPDRFVAKSGPRNRVGKIFIDYLRNGVGATTAAAFSARARPGLGVSVPVAWE
ELGDLTSAAHWTIANVGPRLEEMARHDPWAGHDAVRQTLTQASRRLAGS
NT seq 2670 nt   +upstreamnt  +downstreamnt
atggctcaacctacccgtgccacccgtgccgccgaccccgctccggacgccgccgaaccg
ctcggcaaataccggcgcaagcgcgacttcgcggccacgccggagcccagcgggggcaag
gcagccaagggaaccaagaccgcccgcaagcgcgcggcgccggcgctgtccttcgtggtc
cagaaacacgccgcgcggcggctccactacgacttccggctcgaactggacggcacgctg
aagagctgggcggtgcccaaggggccgagctacgacccggccgacaagcgcatggccgtg
cacgtggaggaccaccccctcgactacgccaacttcgaaggcgtgattccggccgggcac
tacggcgccggcacggtcatcgtgtgggaccggggcacctgggtgcccgacggcgacccg
gccgccgcccatcgcgcctatcgggacggcaagctcaagttcgaactgcgcggggagaag
ctcaagggccactggaccctcgtacgcatgcgcggcaagcgccaacgtgacgaccaacgc
gacgaccagcgcgacaacaacggctggctgctgatcaaggagcgcgacgagtacgcgcag
gccgcgtcggccttcaatgtggtggacgccatgccggacagcgtgctggccggcacggcc
agggcggcgaagaaggtggcaaagaaagcaccggccaaatcggccaagtcagcagccgcc
aagaaggccaacgcccgcgacctccccgctctgcccgagggcgccaagaaggccaagctg
ccgctggcgctggcaccccagctcgccacgctggtggaaaaagcgccggccgacagcagc
cagtggcagtacgagatcaagttcgacggctaccgcgtgctggcccggatcgatggcgac
gacgtgcgcctgttcacgcggcagggcaacgactggacgtcgaagctgcgcggcctggcg
gcggagatccgcacgctgggcctgcccgacggctggctggacggcgagatcgtggtggtg
gacgcgcagggcatcaccgacttccaggcgctgcagaacgcgttcgagacctcgcgcgcg
gacgccatccagttctacgccttcgacctcccctactacgccggccacgacctgcgcgcc
gtgccgctggaccagcgccggctgctgctgcgccggctgttcgaggccaacaccgcgccc
cggctccatttcagcgagagcttcgaggccagcccggacgagatgctcgccgccgcctgc
cgcatgaagctggaaggcgtgatcggcaagcgcaacgacgcgccctacgtcagcacgcgc
gccaacacgtggatcaagctcaaatgcacgctgcggcaggagttcgtgatcggcggcttt
accgacccgaagggcagccgcagcgggctcggcgccctgctgctgggcgtgcacgacgcg
cagggcaagctgcgctacgccggcaacgtcggcaccggcttcgacaccgcgatgctcggc
acgctgcgcaagcagctcgacccgctggtgacggacgccccgccgttcgacgacctgccg
cgcggcattcgcggccactgggtcaagccaaagctggtagcggaggtgtccttcggcgcc
tggaccagggagggccgcgtgcggcatgcggtgttccacggcctgcgcacggacaagccg
gccggcgcggtctcggtagagaagccggcggcggcggcgaaatcggccaagtcggcagca
aagaaagccccggccaggaaagccccggccaaggagaccatcggcaagatcgtcgtcagc
catgcggaccgggtcatcgacacctccaccgggctgaccaagggcgacctcgtgcgctac
tacgccagcgcggccgggctgatgctgccctacctcaagggccggccgattgcactggtg
cgcgcgccgtccggcgtggagggcgagcagttcttccagcgccatggcgacaccctcaag
atcgatggcgtgcgcccgctcgaccccaagctctggcccggccatccgccgctgctggag
atcgccacggaggccgccatcgtggcggtggcgcagctcaatgtggtggagtttcacacc
tggaacgcggtggcgcgcagcctcgacaagccgaaccggatcattttcgacatcgacccc
ggcgagggcgtgaaatggccggccatccaggaggccgccgcgctgaccaaggggctgctg
gacgaactggggctgcaaagcttcctgaaaaccagcggcggcaagggcctgcacgtggtg
gtgccgctggcgccgcgggcgaactggggctgggagccggtgcgggacttcgcccaggcc
gtggtgcagcacatggcggccactattccggaccgtttcgtggccaagagcgggccgcgc
aaccgggttggcaagattttcatcgattacctgcgcaacggtgtcggggctaccacggct
gccgcgttctcggcacgtgcgcggcccgggctgggcgtgtccgtgccggtggcctgggag
gagctgggcgacctgacctcggcggcgcactggaccatcgccaacgtgggcccgcgcctt
gaggaaatggcccggcatgacccgtgggccgggcacgacgccgtgcgccagacgctgacc
caggccagcaggcggctggccgggtcctga

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