Clavibacter capsici: AES38_11065
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Entry
AES38_11065 CDS
T05227
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccap
Clavibacter capsici
Pathway
ccap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AES38_11065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccap03400
]
AES38_11065
Enzymes [BR:
ccap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AES38_11065
DNA repair and recombination proteins [BR:
ccap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AES38_11065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ALD13393
UniProt:
A0AA86GHA1
LinkDB
All DBs
Position
complement(2364827..2368459)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLFVVT
ATGRESEGMRRSLAAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEAWHAAL
GQGAREVPAAEVRPLVVVASVRAALQPVADNLTELPPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRVEFFGDEVDQMRPFAVADQRSLEETVDS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDKLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQATDVLPEDLGIDEVMTVRIEADPVPSFAGNADGAIEHVRERLAT
GWTVGVVAQGSGLVERADTVLREAGVPARVVEEFPAAPEAGIAYLLRSAIDAGFEMPEVK
LAILTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTEKESRETIKGLEDGSVDVVIGTHRLLTGSIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSEAM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELADRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFTVEPA
PAAKESAPKA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgctgctc
gcggggctcctccgccagcgcatccagcgcggcatcccggggtgcctgttcgtcgtcacc
gccaccggccgcgagtccgagggcatgcgccgcagcctcgccgccgtgctgccggacgcc
gagatcctcgagttccccgcctgggagacgctgccgcacgagcggctcagcccgagcgcc
gagatcgtgggcaagcggatccacgcgctgcgccgcatggaggcgtggcacgccgcgctc
ggccagggcgcgcgcgaggtgccggccgccgaggtgcgcccgctcgtcgtggtcgcctcg
gtgcgtgcggcgctccagccggtcgccgacaacctcacggagctgccgcccgtgcagctc
gccaccggcagccgcggccacgacctgtccgagctcgccgtgcggctcgtcgacctcgcg
tactcgcgcgtcgacatggtcacgcgccgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgcccgtgtccgaccaccccgtgcgcgtggagttcttcggcgacgaggtc
gaccagatgcggcccttcgcggtcgccgaccagcgctcgctggaggagacggtcgactcg
gtcgagctgccgccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgcgaagatcgccgagggcatc
ccggtggagggcatggaatcgctggcccccgcgctggtcgacaagttggtccccgtcacg
cactacctgccggtcgacgccgccatcgccgtcgtgtcgccggagcgcgtgtccacccgc
gcgcagagcctcgccgacaccaaccgcgagttcctcgacgccgcgtggaacgccgccacc
gcgggcgcgcaggcgcccatcgacctcgcctccggcgacttcctctcgctcggccgcctg
cgcgacgcccggggcccgcgtcgctggtggaccctctcgggcttccaggccaccgacgtc
ctgccggaggacctggggatcgacgaggtcatgaccgtccgcatcgaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgtgcgcgagcgcctcgcgacc
gggtggaccgtgggcgtcgtggcccagggatccggcctcgtcgagcgcgccgacaccgtg
ctccgcgaggcgggcgtgcccgcgcgcgtcgtcgaggagttcccggcggcgcccgaggcc
ggcatcgcctacctcctccgctccgcgatcgacgcgggcttcgagatgcccgaggtgaag
ctcgccatcctcaccgagagcgagttctacgggcgcgcagccggatacgacagccgccag
gtcaagaagctcgccacccgccgcaagaacgtggtggatccgctgcagctgaagcccggc
gaccacgtcgtgcacaccacgcacggcatcgggaggttcgtcgagctcactcagcgcgag
gtctcctccggcggacgcaacgccgtgaagacccggcgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctgctcagccgctacgtcggcggggaggagcccgccctcagcaagatgggcggcagcgac
tgggccgccgccaagggcaaggcgcgccgggccgtccgcgacatcgcggtggagctcgtg
aagctctactcggcgcgcatggcgtcgcgcggccactccttcccgccggacaccccgtgg
cagcgcgagctggaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctggtctcgggcgac
gtcgggttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgcccacgacgctgctcgtgaagcagcacttcgagacgttc
tccgagcgcttcgccggcttcccggtgcacctgcgccagctcagccgcttccagaccgag
aaggagtcgcgcgagaccatcaaggggctcgaggacggctcggtcgacgtggtcatcggc
acccaccgcctgctgacgggcagcatcgccttcaaggacgtggggctcgtcatcatcgac
gaggagcagcggttcggcgtcgagcacaaggacgcgctgaagaagctcaaggcgaacgtc
gacatcctcgcgatgtcggccacgccgatcccgcgcacgctcgagatggcggtcacgggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcacccgatcctcacgttc
gtcggcccgaacagcgagaagcagatcgccgccgccatccgccgcgagctgctgcgcgag
ggccaggtgttcttcgtgcacaaccgcgtctcgagcatcaaccgggtcgcgtcggagctc
gcggagctcgtgcccgaggcgcgcgtcgccgtggcccacggcaagatgagcgaggcgatg
ctggagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacc
atcatcgagaccggcctcgacatcgcgaacgcgaacacgctcatcatcgaccgcgccgac
aagtacggcctcagccagctgcaccagctgcgcgggcgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctctccgagacggcgcacgaccgg
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgcgggcaacctgctgggcggcgagcagtccggccacatccagggc
gtcggcttcgacctctacctccgcatgatcggcgaggcggtctcgaccttccgcggcgac
gtcgcggagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctggaggcgtaccagaagctctccacggcggcc
tcgcccacggccaccgacgaccagatcgaccgggtcatcgaggagctggccgaccgctac
ggcgagccgcccgtggaggtcgacaacctcgtgcgggtctcgcgcctgcgccgcgtggcg
cagcgggctggcctcagcgaggtcgtcgcgatggggccgaacctccgcatcgcgccggcc
gacctcgccgacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccgcctgttc
gcccagaccaacgccgtgaccgtcccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctcgtggactgggtgcggcagctcctcgacgccgtgttcacggtggagccggcg
ccggccgcgaaggagtccgcgccgaaggcgtga
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