Cyprinus carpio (common carp): 109066022
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Entry
109066022 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain only protein 7-like
KO
K06084
F-box protein 20
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
109066022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109066022
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
109066022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ
PDZ_6
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
109066022
NCBI-ProteinID:
XP_018938545
LinkDB
All DBs
Position
Unknown
AA seq
1868 aa
AA seq
DB search
MGCLPSVSCRSSLRSLERHPKLPTHWFLVLPVFVLVSQAVTKKKFWNSNFRSSLENGLLL
CDLINKIRPGVIKKLNRLATPIAGLDNINLFLKACAKLGLKEAQLFHPGDLQDLSTRVTV
KPQESSRRLKNVLITIYWLGRKAHSDPFYNGPYLKLKAFEGLLGTALYKALEDCTSLRGS
VRNSSCRDNWYSEKEELFPLRAGHRREDSLDSLDSLGSRTYSTSSDTTLKGNSEGCGSDP
EADLSFMMSEYKEYRRSQVIAPKTPTQFNQFLPTKEKQSGYVPAPLRKKRADRNDDDRRS
WASPMYTEDDGSLTSPSHERAGSDPSSITGLKSQTAAQPSLAYEYESSDSDADRPDPDVV
LDDFASRRFHSPSSVAPTNFAIPMSQLEAAAIPCTTRSQVAVSNVSRQTLTHLSSQSQPL
ERTYRRPVSTGVCIYDDSEEEDDEFGYADPVQDDLYARKVGLRPQPSVTVPSDKFLPKFW
TPEEDAHVKKIKLGSQRRPWYRKIQGFSHKKSGSSFEESDGDVNPWLSVPSFSRTQSEPP
PSHSLVPEGLALSSLTSTLSSQTQPLTVAQQSAGLHKLEPPDFWPRPDPASGPRLIKCEK
RSLLGREHPNDPYNVSADILPDLENDDMFTRRTKTFHSSDDLAKLKYGNFLLPRRRSEAD
VMVVIQPHHEGEPVYPDIEKDDVVFRRAQQQISNRPLSGAPDNYHPVPIPETWALPPKLQ
AKLICDPVEPRQHKPKPEIKHGAEQHLKTDDMLLRKLRALNTQEKKEREAPSISFSCSNE
DLQKWQAIREASRVRYWKRLMVERLLQKSSGSEGSKSVSDITDSETNLSKLTMELRFEEL
QKMRARIQESEDKWQDDLSRWKNKRRSVNSDIVKKKEEREQIEQITSGTRKPKTFKEMQD
ARENREQSNYRDSLNSVTDDVFEEPVPRSRTLPVRSYTIDTPNMDKPSVPSIPSLREKQP
VAGTEFPTKRDRSSPDIPLKMSNNIVESQTKTQSLLDGPVPTFSNSNSSLIKPTSAIKPT
SVNKPSSIFNSSELISSTKPVENSSGLIRPLYKPNSKDTKQSGLDQVSASVPRSYQRSDS
ARLTSVVTPRPFGTQSNRIASLPRVFTMDDSLKRTNGETDSLKKTMVSNRYAQYVKDEDI
SQESPVQSSDEERKTPSPVPPVNRVSSMPKSPSPLIPPNEVDYSEMRISLNQKPNSSRDF
GFQSNWDSTGVRVKSVVPGTPAEHGQVKVGDEILTVNGHRVADMSYTEWKNSMEEALQQG
SLLMDICRHGKNNWGRDLPSLPFKSHKTINLTSLDPLGPSEPYLSTSLDFTSQQTKDTVV
KTVNVSSQPRNNYGSNGINGGFHEDSKTVNNKESESITMKNLKRRSEFFEQGGSDTAISN
LPIPSITTSTAQYSWDPEEERRRHEKWQKEQERLLQERYKKEQEKLDEEWRKAQQELEKE
SFKKHEEEKLRLEEERRKEGTRAPXEERKKKMEEERRKREEQERLEKEKKKMEEERKKRE
EERLRFEEERRKRQEQERFEEEKKKREEERDRGEERRGRRRRLEEQKRFQEQDKVDYFGY
TNVYPQLSYSHRSISKSTPELDEVAKPEIKGVYSKHRGLAGWLLEEELRRKKNPQIQREQ
AASELELERRSILNAMKYRDPEIASDGLGEYSRDYKKEPLSLAEVERQQILQEMKKKTSL
NTDNSWIRQQSSASVTAKEPIDLPLRRGESLDNLDMPRSSWSSSWSTSSNTSSIPDYSRP
HSSLSGSLSYQSGRPGSGTLQSSQSMSSLRQSWSPSATTPEPEPRGPSRNRSVSGRKICS
LCNSPLGKGAAMIIESLGLCYHLSCFKCIDCRSDLGGTKAGAEVRIRNQQLYCNACYTRL
KTGQPTAM
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtctgccctctgtgtcttgcaggagtagcttgagatcattggaaagacatcct
aaacttcccactcactggttcttagtgcttcctgtgtttgtcctcgtctcgcaggcagtc
actaagaagaagttttggaacagtaatttccggagttctctggaaaatggacttctgttg
tgcgatctgatcaacaagatcaggcccggtgtcatcaagaaactaaacagattagccaca
cctattgctggcctggacaacatcaacctcttcttaaaagcctgtgcaaagcttggacta
aaagaggctcagcttttccacccaggagacctgcaagacttatccacacgtgtgactgtc
aagccccaggagagcagcaggaggctcaaaaatgttctgatcaccatatactggctgggt
agaaaggcacattctgatcctttttataatggaccttacctaaaactaaaggcttttgag
ggattacttggtacagcactatataaggcactagaggattgcacatccttgcggggcagt
gtgcgaaacagctcttgtagagataactggtactcagagaaagaagagctcttcccatta
agggccggacacaggagagaagactctctagacagcctcgactcactgggctccagaact
tacagcacatcctcagacaccacactcaaaggcaacagtgaaggttgtggcagtgaccct
gaggcagatctgagcttcatgatgtcagaatataaagaataccgccgttcacaggtcata
gcacctaagacccccactcagttcaatcagttcctgccaacgaaggaaaagcagtcaggc
tacgttccagcaccattacgcaagaaacgtgcagaccgaaatgatgacgacaggagaagc
tgggctagccctatgtacacagaagatgacggctctttaacaagtcccagtcatgagagg
gcaggttcagacccttcatctatcaccgggttgaaatcccagactgctgctcaaccgtct
ttggcctatgagtatgagagcagtgattcagatgcagaccgaccggatcccgacgtggtt
ctagatgactttgctagccgtagatttcacagcccctcctctgtcgctccaaccaacttt
gccatacccatgagccagctggaggcagctgctatcccttgtactaccaggtcacaggtg
gctgtcagtaatgtgtcccggcagacactgacccatctcagcagtcaatcacagcctcta
gagaggacttacaggaggcctgtatccactggtgtctgcatttatgatgactctgaagaa
gaggatgacgagtttggctatgctgatcctgttcaagatgatctttatgcccgtaaagta
ggtctgaggcctcaaccgtctgtaacagtgccttctgataaatttctgcccaagttctgg
acacctgaggaggatgcacacgtgaagaagatcaaactgggctcccagcgccggccttgg
tacaggaagatccaaggtttcagccacaagaagtcaggttcatcttttgaagaatcagac
ggtgatgtcaacccctggctctctgtaccttctttctctcgcactcagtctgaaccccct
ccctctcactccctagtacctgaaggcctcgctctgtccagcctcacttccacgctcagt
tctcaaacacaacccctcacggttgctcagcagagtgcagggctgcataagttagaaccc
cctgatttttggcccagaccggatcccgcctctggccccagactcataaaatgtgaaaag
cgttcccttctagggcgtgaacaccctaatgacccatacaacgtttctgccgacatcctg
cctgatttggaaaatgatgatatgtttacacgtcgtacaaaaaccttccactcaagtgat
gacctggccaagttgaagtatggtaacttcctgttgcctcgccgcagatcagaggccgac
gtcatggtggttattcagccccatcatgagggtgaacccgtttatcctgacattgaaaaa
gatgatgtggtttttcgaagggctcaacagcaaatcagtaatcgccctctgtctggggcc
cctgataactaccaccctgttcctattccagagacatgggctttgccaccaaaacttcag
gccaagctgatatgtgacccagttgaacccagacagcacaaacccaaaccagagattaaa
catggagcagaacagcacctgaaaacagatgatatgctacttaggaagctaagggcttta
aatacccaagaaaagaaggaaagggaagctcccagtatttctttctcttgcagtaatgaa
gatttgcagaaatggcaagctatcagagaggccagccgtgtgcgatactggaagaggcta
atggtggagagactgctccagaaaagctctggtagtgaagggagcaaatcagtgagtgac
atcaccgacagtgagacaaacctcagcaaactgacgatggagttgcgctttgaagagctg
cagaagatgcgtgctcggattcaggaaagtgaggataagtggcaagatgatctttcaagg
tggaagaataagcgcaggagtgtgaattctgacattgtgaagaagaaagaggagagggaa
cagatcgagcagatcacttcaggcaccaggaaaccaaagacctttaaggaaatgcaggat
gcaagagagaaccgagagcaaagcaactacagggacagtttaaactccgtcactgatgat
gtcttcgaagaacctgtaccccgaagcagaactctgccagtacgtagctacaccattgac
acccctaacatggacaaaccttcagtaccctccataccatctctgagagaaaagcaacct
gtcgctggcacagagtttcctactaaacgtgatcgctccagcccagatatcccacttaaa
atgagtaacaacattgtggagagccaaacaaagacccaaagccttctggatggtccagtt
cctacgttctccaacagcaactccagcctgattaagcccaccagtgcgatcaagcccacc
agcgtcaataaacccagcagcattttcaacagctcagagttgattagcagcactaagcca
gtcgaaaactccagtggtctcattagacctttgtataaacccaattcaaaggatacaaag
cagtctgggctggatcaagtttctgcctccgtccccaggagctaccagagatcggatagc
gcaagactcacctccgtagtcacgcccaggccattcggcacacagtccaacagaattgca
tcccttcccagagtgttcacgatggatgactctcttaagcgcacaaatggagagacagac
agcctcaagaagacaatggtttccaaccgctatgctcagtatgtgaaagatgaagatatt
tcccaggaaagtcctgtacaaagcagtgatgaagagaggaaaaccccgtctcctgtccct
ccggtcaacagggtgtcctccatgcccaaatctccttccccactcattcctcctaatgag
gtggactacagtgagatgaggatcagcctgaaccagaaacccaacagcagcagggacttc
ggcttccagagcaactgggactccactggggtccgtgtcaaatctgtagttccaggcacc
ccagcggagcacggtcaagtcaaggttggagatgagatccttacagtgaacggccacagg
gtggcagacatgagctatactgagtggaagaacagtatggaggaggccttgcagcagggt
agtctgcttatggacatctgtagacatggcaagaataactggggcagagacctaccttcc
cttccatttaaaagccataagaccatcaatctgaccagtctggatcctctaggtccctct
gagccatacctcagcaccagcctggatttcacatcccaacaaacaaaggatacggtcgtg
aaaactgtgaatgtcagctctcagcctagaaataattatggttcgaatgggataaatggt
ggtttccatgaggattcaaagactgtgaataataaagaatctgaatccattactatgaaa
aacttaaaaaggaggtcagagttttttgaacaaggtggatccgatacagcaatatcaaat
ctgcccattccctccatcactacatccactgcacaatactcctgggacccagaagaagag
cgcagacgacatgagaagtggcagaaagagcaggagcgcttgctgcaggagaggtacaaa
aaggaacaagaaaaactggatgaggagtggagaaaggcacagcaagagcttgagaaggag
agcttcaaaaaacatgaggaggagaagctgcgtttagaggaagagaggagaaaagaggga
acaagagcgccttgagaagagagaaagaaaaagatggaagaagagaggagaaaaagagag
gaacaagagcgccttgagaaagagaagaaaaagatggaagaagagaggaaaaaaagagaa
gaggagagactgcgtttcgaggaagagaggagaaaacgacaggaacaagagcgttttgag
gaagagaagaagaagagagaagaagagagagacagaggagaagagagaagaggaagaagg
aggcgactagaagagcagaagagatttcaggagcaagataaggtggactactttggctat
accaatgtttaccctcagttatcctactcacacagatccatttcgaaatctactccagaa
cttgatgaggttgcaaaaccagaaattaaaggtgtatacagcaaacacaggggtttggca
ggatggctgctggaagaggaactgaggcgaaagaaaaaccctcagatccagagagagcag
gcagcaagtgagctagagcttgagaggagaagcatcctcaatgccatgaaatacagagac
ccagagatagcgagcgatggtctgggtgagtacagtagagactataagaaagagcctttg
tctctggctgaggttgagaggcagcagatccttcaggaaatgaagaagaagacttccttg
aacacagacaacagctggattcgccagcagagctctgccagtgtcactgccaaagaaccg
attgatctgcccctcaggagaggcgagtcacttgacaacctcgatatgcctcgttcttct
tggagttcatcatggagcacatctagcaacacctcatccataccagactacagccggcct
cattcatccctctctggctccttgtcataccagagtggacgtccagggtctggcactctg
cagtcatctcagtccatgagctccctcaggcagtcctggtccccatctgcaactacacca
gagccagagcctcgaggtccatcgcggaataggtcagtgagtggcaggaaaatatgttca
ctctgtaattcaccactgggcaaaggagcagccatgatcatcgagtccctggggctctgt
tatcatttgagttgtttcaagtgcattgactgcaggtctgatttgggaggcacaaaggca
ggagcagaagtcagaatacgaaaccaacagctctattgtaacgcctgctatacccgactc
aaaactgggcagcccacagccatgtga
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integrated database retrieval system
