Cyprinus carpio (common carp): 109083513
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Entry
109083513 CDS
T05134
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03022
Basal transcription factors
ccar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109083513
09124 Replication and repair
03420 Nucleotide excision repair
109083513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109083513
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109083513
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109083513
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109083513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Matrix
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
109083513
NCBI-ProteinID:
XP_018953847
UniProt:
A0A8C1V066
LinkDB
All DBs
Position
9:complement(7811623..7816474)
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVDDILFQAKRKRVFEGHGQVRLGMMRH
LFVIIDSSRSMEDQDLKPNRLTSTLKLMEFFVEEYFDQNPISQIGIITTKNKRAEKLTDL
AGNPKKHIAALKKAVDGTCVGEPSLYNSLNVAMQTLKHMPAHTSKEILVIFSSLTTCDPA
NIYELIKTLNALKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHVIASISDQDAKPSFSMSHLDSTSEPGLTLGGYFCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQETPLEEYEGERFCEACQGELKDKSIFTC
QACKKVFCVECDLFIHDTLHCCPGCMQTDRTS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagcaaaacgctgggaaggaggatacgaacgaacatgggag
gtgctgaaggaggatgaatctggatctctcaaagctactgtggatgacattcttttccag
gcaaagaggaaaagagtgtttgagggtcatggacaagttcggcttgggatgatgcgccat
ctctttgtgatcattgactcatctagatcaatggaagatcaagacctgaagcccaacagg
ctgacctcaaccttgaagctgatggagttttttgtggaggaatactttgaccagaatcca
atcagtcagattgggatcattaccaccaagaacaagagggcggagaagctcactgatctt
gcagggaaccctaagaagcatatagcagctctgaagaaagctgtggacggcacatgtgtt
ggtgaaccatctctctacaactctctcaatgtggctatgcagactctgaaacacatgcct
gctcatacaagcaaagagatcctggttattttcagcagtcttactacctgtgacccagcc
aacatctatgagcttatcaaaactctgaatgctttgaagatcagagtgtctgtgataggc
ctgtcggcagaggttcgagtgtgcaccattctcacacgagaaactggaggatcctataat
gtgatattggatgagagtcattttaaagagctgctgatgctgcatgtgaagcctcctcct
gccagctcctcctcagagtgctccctcattcgcatgggtttccctcagcatgtcatagcc
tccatctctgatcaggatgccaaaccctcgttcagcatgtcgcacctagacagcactagt
gagccaggactcactcttggtggctacttctgcccacagtgtagagccaaatacactgag
ctgccagtggagtgtaaagtgtgtggtctgactttagtttccgctcctcacctggcccgt
tccttccatcacctcttccccctggaggccttccaggagaccccactggaggagtatgag
ggggagaggttctgtgaggcttgccaaggagagttgaaagacaaaagtatatttacttgt
caagcatgtaaaaaagtgttctgcgtggagtgtgatctcttcatacatgacacactacac
tgctgtcctggctgtatgcagactgacaggacatcctga
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