Cyprinus carpio (common carp): 109090026
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Entry
109090026 CDS
T05134
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109090026 (upf1)
03015 mRNA surveillance pathway
109090026 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109090026 (upf1)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109090026 (upf1)
5.6.2.5 RNA 5'-3' helicase
109090026 (upf1)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109090026 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109090026 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_12
AAA_30
AAA_19
ResIII
nSTAND3
Helicase_RecD
DEAD
SLFN-g3_helicase
AAA_16
UvrD-helicase
ATPase
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
109090026
NCBI-ProteinID:
XP_018959435
LinkDB
All DBs
Position
10:complement(4941796..4966066)
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AA seq
1037 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEFEFTDFTLPSQTQTQGHTQSQLDNQVNG
PDGVLPNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTATDRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRYISTSYPTLNTNMCRWMDLVMCSNVCVCVCVCV
CARRYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMNIPI
PFNLVMPPIPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNSQAS
QDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTY
QGERAYQHGGVTGLSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggatctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaactcagggccatacccagagtcaactcgacaaccaggtgaatgga
cctgatggtgttctgcccaacggagacgatgcagtggtgaagaccagccagcttctggcc
gagctgaactttgaggaggacgaggaagatacttactacactaaagatcttccggtgcac
gcctgcagctactgtggcatccacgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcacaaggacggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagcc
gactctgttgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaactgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccgacagcgacactggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgatacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcggtataagggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccgcataacttccaggtggactttgtctggaagtcgacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtccggatat
atctatcacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaacggtccggtgctggtttgt
gctccgagtaacatcgcagtggaccagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattcccccgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgacgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagttccgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccgtcaaacatcttctacgagggctct
ctgcaaaacggggtcaccgccaccgatcgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggtacatttcaacatcatatcccactcttaacacaaatatg
tgtaggtggatggatctagtcatgtgctccaatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgcgcgcagatatggcgtgatcattgtgggcaaccctaaggctctgtccaagcagcct
ctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaaggaccgctg
aacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtcaacaccatc
aaccctggagcccgtttcatgagtaccgccatgtacgacgcacgagaggccatgattcct
ggatctgtgtatgatcgcagcagcaccgggcgtccatctaatatgtacttccagacccat
gaccaggtcggcatgatcgggactgggccgaacccgatgggctccatgaacatccccatc
ccgttcaatctggtcatgcctcccattcctccgcctgggtacctgggccaggtgaacgga
cctgctgccggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggtcgtcagagg
aaccgtggcactggtaatcacggcagtgggcaggccaacatgccgaacagccaggccagt
caggacctggtgtcccagcccttctctcagggtccactgacccagggctacatcaccatg
agccagccgtcacagatgagccagcctggactgtcccagccggagctctcacaggatagc
tacctgggtgatgagttcaagtcccagatggacgtggcgctttcccaggattccacctac
cagggcgaacgggcatatcaacacggaggagtgactggactctcacagtactag
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