Cyprinus carpio (common carp): 109101703
Help
Entry
109101703 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109101703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109101703
Enzymes [BR:
ccar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109101703
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109101703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
109101703
NCBI-ProteinID:
XP_018970651
LinkDB
All DBs
Position
27:complement(13906586..13911531)
Genome browser
AA seq
910 aa
AA seq
DB search
MMEGASKSDATPQTAVAAQVPFIDLCTVLENIQKTKLRPDKGKILKDFIDSWRNFHAALH
KDNSNTADSFYAAMRLIVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPDANKLLNYRA
PTTSQGESGDFALMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVTTDLNKVCRQLHDPSVS
LSEVSIDLFSAFKPMLAAVANIRQIEKQMGNRTFYIETKLDGERIQLHKAGDVYKYYTRN
SYEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRL
MDDSDLQTCFCVFDVLLVNNQKFANEPLKKRYEILETIFTPVKGRIQLVTKAEGKTMQEV
VNSLNEAIDNLDEGIMVKDPMSIYKPDKRGEGWVKIKPEYVDGLMDELDLLIVGGYWGKG
RRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNRNNP
PAAILCGTEKPEVYIEPRNSVIIQVKAAEIVSSEMYKTNCTLRFPRIERIREDKEWYQCM
TLAELSQFRSRASGKLASRHLHIQEDQPEKKKHKLVAKPKKTIGVIDHFKSQDLSAVTKE
TDMFEDVEFCVINGNDEHPRQSVEKVVARCGGIVVQNPGKDTYCVIAALQNMRVKNLISS
DQHDVVWPTWLLECLQNKQVIPWQPRHMIHMSPSTRDHFAKEYDRYGDSYYVDTDEQQLR
EVFERIGPTEAECSSVAQIEAENAWDDLPTSIFRPYTAYFDRCADFGDPKTIIRGTSLDT
RALEFRFHGGTVVEKLKEGISHVIVESERRILDLKTLRRLYAKKFKIVRESWVTDSIKAG
HVEDETDYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaggtgcctcaaaaagtgatgccacaccacagacggctgttgctgcacaagtt
ccgttcatcgacctctgcacagttctggagaacatccaaaagaccaaactccgaccagac
aaaggcaaaattctaaaggattttattgattcttggaggaacttccatgcagcgcttcac
aaggacaattccaataccgcagattcattttatgcagccatgcgtcttattgtgcctcaa
tttgagcgagagcgaatggcttacggtataaaagaaaacatgcttgccaaactatatatt
gaagttttaggcctacctaaaaatggacccgacgcaaacaaactcctaaattatagagct
ccaaccacaagtcagggagaatcaggtgactttgcccttatggcctacttcgtcctgaaa
aaaaggtgtacaagtcaggggaatttaagcatcaaagaagtcaatgacttcttggattcc
gtagctatcaacaatgctagcaaacagaaggatcaagtgaagaaaagccttttgcatctg
ataacccagagttcagctttggaacagaagtggctcattagaatgatcctcaaggacatg
aaacttggcattagcaaggagacagttcttcaggttttccatccagatgcaccagaactt
tacaatgtcaccacagatctgaataaagtctgcagacaacttcatgatccatctgtgtcc
ctcagtgaggtctccatcgatctgttttctgcttttaaaccaatgctggctgctgttgcc
aacatcagacagatagagaagcaaatgggcaaccggacattctatattgagacaaagctc
gatggtgaacgcattcagctgcacaaagctggagatgtttacaaatactataccaggaac
tcttatgagtacacgcaacagtttggggcctctccactagagggctccctcacaccatac
attcacaacgtcttcaaacctcatgtggttaactgcatattggatggagagatgatggct
tataaccctacaacggagaccttcatgcagaagggcagtaagtttgatattaaaaggctg
atggatgactctgatttgcaaacttgcttttgtgtatttgatgtcttgttagtaaacaat
cagaagtttgcaaatgaacctctaaagaagcgctacgaaattcttgagactatctttacg
ccagtcaaaggtcgtatccagttggtcacaaaagctgaaggcaaaaccatgcaagaagtg
gtgaattctctcaatgaggccattgacaatctggatgaggggattatggttaaggatccc
atgtccatctacaaaccagataaacgtggcgaaggatgggtgaaaattaagcctgaatat
gtggatggtctgatggatgagcttgatctgctgatagtgggaggctactggggtaaaggc
aggagaagcgggatgctctctcattttctgtgtgcggtagcagaggtgccgagtccaggg
gagaagcccacggtgttccacaccctctgccgcattggatcaggctacactatgaaagaa
ctgtacgatcttggtctgaagttggccaaacattggaaagtttacaacagaaataatcct
ccagctgctatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactca
gtgatcatacaagtcaaagcggcagagatcgtctctagtgaaatgtataagaccaactgc
acattacgtttccccagaatagaaagaatcagagaagacaaagagtggtatcagtgcatg
accttggctgaactgagccagttccgctccagagcttctggaaagctggcatccagacat
ctgcatatccaagaggaccagcctgaaaagaagaagcacaagctcgtagctaagcccaag
aagacaatcggagtcattgaccactttaaatctcaggatttatcagcggtcaccaaagag
acggatatgtttgaagatgtggagttttgtgtgataaatggaaatgatgaacatccaagg
cagagcgttgagaaagttgtggcccgctgtggaggcatcgttgtgcagaaccctgggaaa
gacacatactgtgtgattgcagctctgcagaacatgagagtaaagaacctcatctcctca
gaccaacatgatgtggtgtggcctacttggctgctggagtgtctgcaaaataagcaggtt
ataccatggcaaccacgtcacatgatccacatgtcaccttccaccagggaccacttcgct
aaagagtatgatcggtatggagacagttattatgttgacactgatgaacaacagctgagg
gaagtctttgaaaggattggccccacagaagctgaatgttcgtctgtggcacagatagaa
gcagagaatgcctgggatgacttgcccactagcatttttcggccttacactgcatacttt
gaccggtgtgctgactttggagatccaaaaaccatcatacggggtacaagtttggacaca
cgtgccttagaattccgattccatggtggtacagttgtggagaaactgaaggaaggaatc
tcgcatgtcatagtagaaagtgaaagaagaattctggacttgaagacgttgaggcgactt
tatgctaagaagttcaaaattgttagagaatcttgggtgaccgattctatcaaagcaggc
catgtagaggacgagactgactacttaatataa
DBGET
integrated database retrieval system
