Cyprinus carpio (common carp): 109107610
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Entry
109107610 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109107610
09122 Translation
03013 Nucleocytoplasmic transport
109107610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109107610
03041 Spliceosome [BR:
ccar03041
]
109107610
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109107610
Spliceosome [BR:
ccar03041
]
Complex C
Other components
EJC/TREX
109107610
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109107610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
HsdM_N
Motif
Other DBs
NCBI-GeneID:
109107610
NCBI-ProteinID:
XP_018976411
LinkDB
All DBs
Position
4:complement(1453903..1463130)
Genome browser
AA seq
541 aa
AA seq
DB search
MPVYARHLRPFLYITVLAATKSAVDIRNCKPLTSAFSHLPGNETEKKATLDQALRGVLEE
QIVKQKVNVEDFLSLIYISIDGVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSTTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSXSQFNLD
NITVFNKNEQDSTLGLQHTEVKEEGMEVEEGEMGDEDAPAPCSIPIDYNLYRKFWTLQDY
FRNPVQCYDKFSWMTFLKYSDETLAVFKSFKLDDMQASKRKLEEMRTAGGDHVYFAKFLT
SEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKLVYQL
LRETPPDGDKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAPEDFL
GKGPDRKILMGNDELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAIEQADPSNMVEEE
YKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPVSGHPHYQT
M
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctacgcacgtcatctgagaccttttctgtacatcaccgtcttggctgccact
aaaagtgctgtagacatcaggaactgtaaacccctgaccagtgctttcagccatctgcct
ggaaatgaaactgagaagaaagccactcttgatcaagccctgcgtggagttcttgaagag
cagattgtgaagcagaaagtgaacgttgaagatttcctttctctgatctacatcagtata
gacggtgtgaccgaaggcatctgctctgctaccactccttttcttctgctgggagatgtc
ctcgactgccttcctctggaccagtgcgacaaaatcttctcctttgttgaagaaaatgtg
tctacatggaaatctaccaccttttactctgctggaaaaaattacttgttgagaatgtgc
aacgacctgctcaggagactctccaagtctcagaatacagtgttttgtggacgaatccag
ctgtttttagcacgtctctttcctttgtcagaaaaatcanagagtcagttcaaccttgat
aacatcacagtgttcaataaaaatgagcaggatagcacacttggactgcagcacactgag
gttaaggaggaagggatggaggtggaggagggagagatgggcgatgaagatgcacctgct
ccctgctccattcctattgactacaacttgtacagaaaattctggaccctgcaggactat
ttcagaaaccctgtacagtgctacgacaagttctcatggatgactttccttaagtattca
gatgagacactagctgtgttcaagagcttcaaactggatgacatgcaggcgtcgaagaga
aagctggaggagatgaggactgctggaggagaccacgtctactttgccaagttcctcacc
agtgagaaattgatggaccttcagttgagtgacagcaacttcagacgacacattctgctt
cagtatctcatcctcttccagtatctcaagggccaggtcaagttcaagagttccagctgt
gttttgaatgacgatcagtctttgtggattgaggacacaaccaaactagtctatcagtta
ctgagagaaacccctccagatggtgacaagtttgcgtcgatggttgagcacatcttgaac
acagaagaaaactggaactcttggaaaaatgaaggctgtccaagctttgtgaaagaaaga
ccagccgagaccaaacccatccgtcccagcagaaagagacaagcaccagaggactttttg
gggaagggccctgatcgcaaaatcctcatgggaaatgacgaactcacaaggctctggaat
ctaaaccctgacaatatggaggcctgcaagtcagatagcagggagttcatgccatccctg
gaggacttttttgaggaagctattgaacaggcagatccatcaaacatggtggaggaagaa
tacaaagttgtgcgtaactcaaactacggctggcgagccttgcgattgctctccagaagg
agtcctcacttcttccagcccaccaaccagcagttcaagagtctggcggactatctggaa
aacatggtcatcaaactggccaaagagcttcctgtgagtggacatccacactatcagacg
atgtag
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