Cyprinus carpio (common carp): 109108092
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Entry
109108092 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109108092
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109108092
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
TPR_19
TPR_12
Motif
Other DBs
NCBI-GeneID:
109108092
NCBI-ProteinID:
XP_018976815
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All DBs
Position
34:10043059..10057632
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AA seq
1164 aa
AA seq
DB search
MALFPSCAELSGNNSSTGVRAPADLEWLSNQSFCKEDALKTHQRATERAQAEAEEPAGTR
EQKLKEREDSYGRSKKRKKEKKKKQKKKKSRDNSERSGSESDTVYPSDLLKKENTDREEA
QVRVSETFMWLDDLQTPSDSPFCIDRRADRANWEYKSLYRGDIARYKRKGGSCLGLDFRM
QAVSWNDGGPEKKRVDKKPERYFCPSTRQLLRSDPYSLPALPVLSEGSAVSSDSFIKLSA
CTVEQGSSTQASVSWVNPLGIYDRGTSLWLEGKGQPEVKGDQQDVEAQGSSSSTLLSARV
EEFNRKLRENPTDTQLWLDFIHFQDELAFGSGSFSAASDTDNDGDMKKMSLRAVLEKKLS
IVDRAVEGNPASVDLKLEKLHLCKELWEPATLQKEWKKLVFIHPNSGPLWRKYLLFTQSL
FSTFSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEK
AVCLFQALLDFTFFKPDSVKDLPTRQQVDFFEPFWDSGEPRVGERGARGWKAWMLQQERG
GWVIPSEPDDDDEEEQDDAEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDC
EDPDRQVLFDDIGPSMIRVDRPDLQLQLILSFLQFLGLPGPSGKFSTTSSSNILLDDLTF
LEEIPDPERPLTSYDLPMAGICAVGHMTFLSDCRRQAGLCKAGEEFLQNVLQQTLQLIPT
QDQATVTLCWLQYEKLKVLRCLRSGNKRRLKSQGKRSKRLAKRLLKEPDNRGSLALWREY
AHLEWLLGNLEEARKVFDTALGMGVTRGLMILFSNDPVLCNLCFLYAQLEVEQALNSGTV
PTSKAVYILTKLAEGAAYTPFSGQINPVTILKARKAYEQALLSFLPEQSTGSNAKAPKKR
HRMSSLVGCFGLFQYLTVGIDAADAVYNQAIQKLISWNLNSEVTDGSLRRPKVFADWESV
AVQHVALLRHHANTNVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFF
HSVAKKTDSVVPYLFAITAEQRLKQMLDSVQRSCLPGEALPTLPNNGLSNRIRCLFENAT
ATEHGAHCPLLWRMYLNFMVCDGNAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEF
LDLMTEKELRLRVPMEEVDILLED
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccgtcctgcgctgaactgtcagggaataacagctctactggggttaga
gctccagcagatttggaatggctgagtaatcagagcttctgcaaagaagatgctttgaag
actcaccagcgggccacagagagagcgcaagcagaggcagaagaaccagcaggcacaaga
gagcagaagcttaaagagagagaagatagctatggcagatcgaagaagagaaagaaagaa
aagaagaaaaagcagaagaagaagaagagcagagataactcggagaggagtggatctgaa
tcagacacagtttaccccagcgacttgctgaaaaaggagaacactgacagagaggaagct
caagttcgggtgagcgagacctttatgtggctggatgacctccagaccccctctgactcc
cccttctgtattgacagaagagctgaccgtgccaactgggaatacaaatccctctatagg
ggagacatagccaggtataagaggaagggaggctcatgcctggggttagacttcaggatg
caggctgtgagctggaacgatggaggcccagagaagaagcgagtggacaagaaacccgag
cgctatttctgtccttccacccgtcagctgctccgttcagatccgtacagtctgcctgct
ttgcctgtactctctgagggcagtgctgttagctctgattccttcattaagctctcagcc
tgcactgtagagcagggctcttccactcaggcatccgtatcttgggtaaatccgctgggc
atctatgaccgtggaacctctctatggctggagggcaagggtcagccggaggtcaaggga
gatcagcaggatgttgaggctcaagggagcagcagcagcacccttctgagtgcacgggtg
gaagagtttaacaggaagctgcgggagaatcctacagacacccagctgtggctggacttt
atacacttccaggatgaactggcctttggttctgggtcattctctgctgccagtgacact
gacaatgatggtgacatgaagaagatgtctcttcgtgccgtgctggagaagaagctgtcc
attgtggacagggcagtggaaggtaaccctgccagtgtggacctgaaactggagaaactc
cacctgtgcaaggaattatgggagccagccaccctgcagaaagagtggaagaaactagtg
ttcatccatccaaacagtggccctttatggaggaagtatcttctcttcacacagagtctt
ttcagcactttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacgctc
agtgcagtccaagatggcagcatggtgtctcaccctccacttccaggcacccaggaagac
ctcttagatatctttctacagcagtgccatttcctgcggcaggcgggtcatacagagaaa
gctgtgtgtctcttccaagcccttctggacttcactttcttcaagccagacagtgtgaag
gacctccccactagacaacaggtggatttttttgagcctttttgggacagtggagagccc
agggttggggaacggggggctcggggatggaaggcttggatgcttcagcaggagagagga
ggatgggtgattccatctgagccagatgatgatgatgaagaagagcaggatgacgcagag
atcaaagacaagacctggcctaagtggaagatctggttggatgtggaggcatcccgagag
gcaaaccactggttgccatggagaccagataaaaccaagggccaatcagaggaggactgt
gaggaccccgacaggcaggtcttgtttgatgatattggcccatctatgattcgtgtggac
agaccagatcttcagctacagttgatcctgtcgttcctgcagttcctaggtctgcctgga
ccttcagggaagttctctacaacatcttcctcaaacattctactggacgatctaaccttc
ctggaggagatcccagacccggagcgaccactgacctcttatgacctcccaatggctggg
atctgtgcagtgggtcacatgacatttctgagtgactgcaggaggcaggcagggctttgt
aaggcaggggaggagtttctccagaacgttctacagcaaactctccaactcatccccaca
caggatcaagctactgttactctctgctggctgcagtatgagaaactaaaggtgctgaga
tgtttgcgcagtggaaataaaaggcgactgaaatctcaggggaagcgtagtaaacggcta
gcgaaacgactgctaaaagagccagataacagaggcagcctggcactttggagagagtat
gcccatctggagtggcttctgggtaatctggaagaggcacgcaaagtattcgacactgcc
ttgggcatgggcgtgactagaggtcttatgatcctgttctctaatgatcctgttctctgt
aatctctgttttctctatgcccagttagaggtagagcaggccttaaacagtgggacagtc
cccacttccaaagctgtctacattctcactaaattagctgagggtgctgcctacactcct
ttctctggccaaatcaatccagtgaccatactgaaggccagaaaggcctatgagcaggcc
ctattgagctttttacctgagcagagcacaggcagcaatgctaaagctccaaagaaacgc
cacagaatgtccagcctggttggatgttttgggctttttcagtacctcacagtggggata
gatgcagctgatgctgtgtacaatcaggccatccaaaaactgatttcctggaatttgaat
tcagaagtgacagatggatctctgaggagacccaaggtctttgcagactgggagtctgtt
gctgtccagcatgtagcactgctgcgccaccacgccaacaccaatgtgtttcctctctcc
cggctaagactggcacttacagatgccctctccttactgccctccagtgcctcattgtgg
caactctaccttcaaacagagaaccgctatcacagtgcaggccgtgcacgcaggtttttc
cacagtgtggcaaagaaaactgacagtgttgtgccgtatctttttgccattactgcagag
caacgactcaaacagatgctggactctgttcagaggtcttgtcttcctggagaagccctg
cccaccttgccaaataatggtcttagcaaccgtatccgctgtctgtttgaaaatgctacg
gcaacagagcatggggcccattgtcctctgctgtggagaatgtatctgaacttcatggta
tgtgatgggaatgcagagaggggcagtggaatcttctacaaggccctacaggcagtgccc
tgggtaaagggcttgtacatggacgcagtgcagctgtttcctgaacgtgtgcaagagttt
ttagaccttatgactgagaaggagttgcgtctgagagtgcccatggaggaagtggacatc
ttgctggaggactag
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