KEGG   Kaistella carnis: EIB73_02615
Entry
EIB73_02615       CDS       T06869                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccas  Kaistella carnis
Pathway
ccas03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EIB73_02615 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccas03400]
    EIB73_02615 (ligD)
Enzymes [BR:ccas01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EIB73_02615 (ligD)
DNA repair and recombination proteins [BR:ccas03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EIB73_02615 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase GH3 DNA_ligase_OB_2 mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AZI32137
UniProt: A0A3G8XK67
LinkDB
Position
578337..580895
AA seq 852 aa
MSLEDYNKKRKFGETPEPEGEKVENSGKLIFVIQRHSATRLHYDFRLEMDGVLKSWAIPK
GPSLDPADKRLAMMTEDHPYDYKDFEGTIPEGNYGGGEVEIWDSGTYEPLEKVEGKTDDL
IMRHELHKESLKFVLHGKKLKGEFALVKIKNSKDGNAWLLIKHKDDFAQKNYNSEDHVPP
KSKVTLREEARPSKKRSKKTSSSEKTFKNYAPALSGERKLKDFITPMLAKVGKKPFNDKE
WVFEIKWDGYRAISDLREDSIKLYSRNGLNYAEKFSKIVKALEDQKFPMVLDGEIVAFNA
DGKPDFQTLQKIDENPDLAMTFQVFDLLWLNGHSTESLTLIERKELLKEALVENEVVKYC
EHIPEHGKDFFDQIKKMELEGMMAKKADSNYSEGVRSSDWLKIKFQNTEDVLICGFTDPK
GSRKNFGALILGTFIDDQLQYCGHAGTGFNDESLKKLHEIFKPFITEKCPFEEIPKTNGP
ATWLKPELVCEIKYTEKTKDGIFRHPVFMGLREDKEVENLKNEDTEESESDSIPISSGKK
QTKISTEIISGKKKGVAKPTIKLTNRDKIYFPESDITKGDLIDYYQSVAKYILPHLKNRP
QSLNRFPNGINGLSFYHKDAGDDAPDWIDKIGIFSESNEKEIHYLICNTANDLAYLNNLG
CIDLNPWNSTIQNLDQPDWLALDLDPSDDNTFDHVIETALAVKEVLDSAKIKGYCKTSGS
SGIHIYIPMNAKYEVEQVKNFAHLLMQKVQKKLPDLTTLERSLKKRSKEKIYLDYLQNRS
GQTLASVYSVRPKPFAPVSMPLNWDELKFGLKATEFNITNSLERIEKKGDLFKPVLGKGI
DMLKSLENLSET
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgtctttagaagattataacaaaaagagaaagttcggcgaaactcctgagccggaaggt
gaaaaggtggaaaacagtggcaaacttatttttgttattcaaagacattctgcaacccga
ctacattatgatttccgtttggaaatggatggtgttcttaaaagttgggccatccccaaa
ggtccgtcactcgatccggcagataaaaggcttgccatgatgacggaagatcatccgtat
gactacaaagattttgaaggtacaattccggaaggaaattatggaggtggcgaagttgaa
atttgggattccggtacctatgagcctttagaaaaggtggagggaaaaacagacgattta
attatgcgacacgaactgcataaagaatctctaaaatttgtgcttcacggtaaaaagcta
aaaggtgaatttgccttggttaaaatcaaaaattctaaagacgggaacgcctggcttttg
ataaaacataaagatgatttcgcccaaaaaaattataattctgaagatcatgttccgcca
aaatctaaagtaacgttgcgggaagaagcgagaccttcaaaaaaaaggagtaagaaaact
agctcctcagaaaagacatttaaaaattatgctccggccctttccggggaaagaaaatta
aaagatttcattacaccgatgctggcgaaagttggcaaaaaaccttttaatgataaagaa
tgggttttcgaaatcaaatgggacggctatcgtgcgatttctgatttacgggaagattcg
attaaactctattccagaaatggtcttaactatgctgaaaaattttcaaaaattgtaaaa
gcgttggaagatcaaaagtttcctatggttctggacggcgaaatcgttgctttcaatgct
gacggaaaaccggattttcaaactttacaaaagattgatgaaaatcctgatttagcaatg
acttttcaggtttttgatttgttgtggcttaatggtcattcgactgaaagtttaacttta
attgaaagaaaggaattattgaaagaagctttggtggaaaatgaagtcgtaaaatattgt
gagcacattcccgaacatggaaaagatttttttgatcagattaaaaaaatggagctcgaa
ggaatgatggctaaaaaagccgacagtaactattcagaaggcgttcgatcttcggattgg
ctcaagataaaatttcaaaatacggaagatgttttaatatgcggctttaccgatccaaaa
gggtctcgtaagaactttggtgcattaattctcgggacttttattgatgatcaactccag
tattgcggtcatgccggaacgggttttaatgatgaatctctaaaaaaattacatgaaatt
tttaaaccattcattaccgagaagtgtccttttgaagaaattcccaaaacaaatggaccg
gcaacctggttaaaacctgagcttgtttgtgaaattaaatacacggaaaaaacgaaagat
ggtatttttcgtcaccctgtctttatgggccttcgcgaagataaagaggtagaaaatttg
aaaaatgaggacacggaggaatcggaaagcgattcgattccgattagcagtggaaagaaa
cagactaaaatatctacagaaataatctcaggtaaaaaaaagggtgttgcaaaacccacc
attaaattaacaaatcgagacaagatttattttccggaaagtgatattacaaagggtgat
ttgatcgattattatcaatctgttgcgaaatatattttgcctcatttaaaaaaccgacca
caatcattgaatagatttcccaatggaattaacgggttgagtttttatcataaagacgcg
ggcgatgatgcacccgactggatcgataaaatcggtattttttcagaatcaaacgaaaag
gaaatccactacttaatttgcaataccgcaaatgatctggcttatctcaataatttgggc
tgcattgatttaaatccctggaattccacgattcaaaatctggatcagcctgattggctg
gctttggatttggatccttcagacgataatacatttgatcacgtaattgaaacggctttg
gcagtaaaagaagttttggattcagcaaaaatcaaaggatattgtaagacctccggcagc
tctggaattcatatttacattccgatgaacgccaaatatgaggtggaacaggtaaagaat
tttgcccatttgctgatgcaaaaagtacagaaaaaattgcctgatcttacaactttagaa
agaagtctaaaaaaacgaagcaaagaaaaaatatacctggattatctgcaaaaccggtcg
ggacaaaccctcgcgagtgtttacagcgttcggcctaaaccatttgcgccggtgtctatg
cctttaaattgggacgaacttaagtttggtttaaaggctacagaattcaatattacaaat
tctctagagcgcattgaaaagaaaggtgatctgtttaaacctgttttaggaaaaggaatt
gatatgctgaaaagcttagaaaatctgtccgaaacctaa

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