Kaistella carnis: EIB73_02615
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Entry
EIB73_02615 CDS
T06869
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccas
Kaistella carnis
Pathway
ccas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EIB73_02615 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccas03400
]
EIB73_02615 (ligD)
Enzymes [BR:
ccas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EIB73_02615 (ligD)
DNA repair and recombination proteins [BR:
ccas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EIB73_02615 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
GH3
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZI32137
UniProt:
A0A3G8XK67
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All DBs
Position
578337..580895
Genome browser
AA seq
852 aa
AA seq
DB search
MSLEDYNKKRKFGETPEPEGEKVENSGKLIFVIQRHSATRLHYDFRLEMDGVLKSWAIPK
GPSLDPADKRLAMMTEDHPYDYKDFEGTIPEGNYGGGEVEIWDSGTYEPLEKVEGKTDDL
IMRHELHKESLKFVLHGKKLKGEFALVKIKNSKDGNAWLLIKHKDDFAQKNYNSEDHVPP
KSKVTLREEARPSKKRSKKTSSSEKTFKNYAPALSGERKLKDFITPMLAKVGKKPFNDKE
WVFEIKWDGYRAISDLREDSIKLYSRNGLNYAEKFSKIVKALEDQKFPMVLDGEIVAFNA
DGKPDFQTLQKIDENPDLAMTFQVFDLLWLNGHSTESLTLIERKELLKEALVENEVVKYC
EHIPEHGKDFFDQIKKMELEGMMAKKADSNYSEGVRSSDWLKIKFQNTEDVLICGFTDPK
GSRKNFGALILGTFIDDQLQYCGHAGTGFNDESLKKLHEIFKPFITEKCPFEEIPKTNGP
ATWLKPELVCEIKYTEKTKDGIFRHPVFMGLREDKEVENLKNEDTEESESDSIPISSGKK
QTKISTEIISGKKKGVAKPTIKLTNRDKIYFPESDITKGDLIDYYQSVAKYILPHLKNRP
QSLNRFPNGINGLSFYHKDAGDDAPDWIDKIGIFSESNEKEIHYLICNTANDLAYLNNLG
CIDLNPWNSTIQNLDQPDWLALDLDPSDDNTFDHVIETALAVKEVLDSAKIKGYCKTSGS
SGIHIYIPMNAKYEVEQVKNFAHLLMQKVQKKLPDLTTLERSLKKRSKEKIYLDYLQNRS
GQTLASVYSVRPKPFAPVSMPLNWDELKFGLKATEFNITNSLERIEKKGDLFKPVLGKGI
DMLKSLENLSET
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtctttagaagattataacaaaaagagaaagttcggcgaaactcctgagccggaaggt
gaaaaggtggaaaacagtggcaaacttatttttgttattcaaagacattctgcaacccga
ctacattatgatttccgtttggaaatggatggtgttcttaaaagttgggccatccccaaa
ggtccgtcactcgatccggcagataaaaggcttgccatgatgacggaagatcatccgtat
gactacaaagattttgaaggtacaattccggaaggaaattatggaggtggcgaagttgaa
atttgggattccggtacctatgagcctttagaaaaggtggagggaaaaacagacgattta
attatgcgacacgaactgcataaagaatctctaaaatttgtgcttcacggtaaaaagcta
aaaggtgaatttgccttggttaaaatcaaaaattctaaagacgggaacgcctggcttttg
ataaaacataaagatgatttcgcccaaaaaaattataattctgaagatcatgttccgcca
aaatctaaagtaacgttgcgggaagaagcgagaccttcaaaaaaaaggagtaagaaaact
agctcctcagaaaagacatttaaaaattatgctccggccctttccggggaaagaaaatta
aaagatttcattacaccgatgctggcgaaagttggcaaaaaaccttttaatgataaagaa
tgggttttcgaaatcaaatgggacggctatcgtgcgatttctgatttacgggaagattcg
attaaactctattccagaaatggtcttaactatgctgaaaaattttcaaaaattgtaaaa
gcgttggaagatcaaaagtttcctatggttctggacggcgaaatcgttgctttcaatgct
gacggaaaaccggattttcaaactttacaaaagattgatgaaaatcctgatttagcaatg
acttttcaggtttttgatttgttgtggcttaatggtcattcgactgaaagtttaacttta
attgaaagaaaggaattattgaaagaagctttggtggaaaatgaagtcgtaaaatattgt
gagcacattcccgaacatggaaaagatttttttgatcagattaaaaaaatggagctcgaa
ggaatgatggctaaaaaagccgacagtaactattcagaaggcgttcgatcttcggattgg
ctcaagataaaatttcaaaatacggaagatgttttaatatgcggctttaccgatccaaaa
gggtctcgtaagaactttggtgcattaattctcgggacttttattgatgatcaactccag
tattgcggtcatgccggaacgggttttaatgatgaatctctaaaaaaattacatgaaatt
tttaaaccattcattaccgagaagtgtccttttgaagaaattcccaaaacaaatggaccg
gcaacctggttaaaacctgagcttgtttgtgaaattaaatacacggaaaaaacgaaagat
ggtatttttcgtcaccctgtctttatgggccttcgcgaagataaagaggtagaaaatttg
aaaaatgaggacacggaggaatcggaaagcgattcgattccgattagcagtggaaagaaa
cagactaaaatatctacagaaataatctcaggtaaaaaaaagggtgttgcaaaacccacc
attaaattaacaaatcgagacaagatttattttccggaaagtgatattacaaagggtgat
ttgatcgattattatcaatctgttgcgaaatatattttgcctcatttaaaaaaccgacca
caatcattgaatagatttcccaatggaattaacgggttgagtttttatcataaagacgcg
ggcgatgatgcacccgactggatcgataaaatcggtattttttcagaatcaaacgaaaag
gaaatccactacttaatttgcaataccgcaaatgatctggcttatctcaataatttgggc
tgcattgatttaaatccctggaattccacgattcaaaatctggatcagcctgattggctg
gctttggatttggatccttcagacgataatacatttgatcacgtaattgaaacggctttg
gcagtaaaagaagttttggattcagcaaaaatcaaaggatattgtaagacctccggcagc
tctggaattcatatttacattccgatgaacgccaaatatgaggtggaacaggtaaagaat
tttgcccatttgctgatgcaaaaagtacagaaaaaattgcctgatcttacaactttagaa
agaagtctaaaaaaacgaagcaaagaaaaaatatacctggattatctgcaaaaccggtcg
ggacaaaccctcgcgagtgtttacagcgttcggcctaaaccatttgcgccggtgtctatg
cctttaaattgggacgaacttaagtttggtttaaaggctacagaattcaatattacaaat
tctctagagcgcattgaaaagaaaggtgatctgtttaaacctgttttaggaaaaggaatt
gatatgctgaaaagcttagaaaatctgtccgaaacctaa
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