Chryseobacterium carnipullorum: EG346_09160
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Entry
EG346_09160 CDS
T06793
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EG346_09160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccau03400
]
EG346_09160 (ligD)
Enzymes [BR:
ccau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EG346_09160 (ligD)
DNA repair and recombination proteins [BR:
ccau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EG346_09160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
DUF5655
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZA48340
UniProt:
A0A376DME5
LinkDB
All DBs
Position
complement(1991119..1992990)
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AA seq
623 aa
AA seq
DB search
MLTKSFEKAFDDEDWLFEIKWDGYRAVADLRHTNPLFYSRNGISFLSKFEKVTKDFSHQK
HKMVLDGEIVAYDAHGKPNFQLLQQIGDHPDMALTYQVFDLLWLNGHSTEKLPLVQRKEL
LKEALTETDIIKYCDHIPEKGIAFFNQMNTMKLEGMIAKKADSLYIENQRSSDWLKIKFT
NTDEAIICGLTEPRGSRESFGALILGKYTDGRLTYCGHTGTGFNNESLKQLYDRLQKMVI
KTSPFETVPTTNMPVTWTKPELVCEIKYSEITKDGMYRHPVFLAIREDKEPEEIQLNPKN
EKSKEMKAKAPLKKSANPEKEKEITLDKHQVHLTNQDKIYFPKDGITKGDVIEYYQSVAS
YILPFLKNRPLSLNRFPGGIEEQGFYQKDAGDNMPDWIKTTKVYSESNDKYIDYVYCNDK
ATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVVETALQVNEVLNSVK
VKGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVNEKLPKLTTLERSLQKRDDKK
IYMDYLQNRIGQTLASVYSVRPKEGAAVSMPLEWNEVKPGLKPTDFTIYNALERIKGKGD
LFKPVLGKGIDMMKVLELLQNGE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaaatcttttgagaaagcattcgatgatgaagactggctttttgaaattaaa
tgggatggctacagagctgttgccgatctacgtcataccaatcccctattctactcacgc
aacggaatttcctttttatcaaagtttgaaaaagttactaaagattttagccaccagaag
cataaaatggtcctggatggagaaattgtcgcttatgatgcgcatggtaaacccaatttt
cagcttttacagcagatcggggatcatcctgacatggcattaacctatcaggtttttgat
cttctctggctgaatgggcattcaacagaaaaacttcctcttgtgcaacggaaggaactt
ttaaaagaggctttaacggaaacggatattatcaaatactgtgatcatattccggaaaag
ggaatcgctttttttaatcagatgaatacaatgaaactggaagggatgatcgccaagaaa
gctgacagcttgtatattgaaaatcaaaggagcagtgactggctgaaaataaaattcaca
aatacggatgaagctattatttgcggattgacagaaccccgtggttcacgtgaaagtttc
ggagctctgattttgggaaaatatacagatggaagactgacttactgtggtcatacggga
acaggttttaacaatgaatctttaaaacaactttatgacagacttcaaaagatggttata
aaaacatcaccatttgaaacggttcctacaacgaatatgcctgtaacatggacgaaacct
gagttggtatgtgagattaaatattctgaaattactaaagacggtatgtatcgtcatcct
gttttcttggctatccgtgaagataaggagcctgaagaaattcaattgaatccaaagaac
gaaaagtctaaagaaatgaaagctaaagccccattaaaaaagtcagcgaatcctgaaaaa
gaaaaggaaattacattggacaaacatcaagtccacctcacgaaccaggataagatctat
tttcccaaagacggcattacaaaaggagatgtgatagaatattatcagtcggttgcttct
tatattcttccttttctgaaaaaccgtccactctctctcaaccgctttcccggtggcatt
gaagaacagggtttttatcagaaagatgcaggagataacatgccggactggatcaaaaca
acaaaggtctattcggaatccaatgacaaatatattgactacgtttattgcaatgataaa
gcaaccttagcctatctgaataatttaggctgtattgatctgaatccctggaacagttca
cttcctgatctggaacatccggattatctggtgctagatctggatccatccaagaaaaat
acattcgatgatgtggttgaaacagcacttcaggtgaatgaagttttaaattcagttaaa
gttaaaggatattgtaaaacttccggcagcacaggaattcatatttatattccgatggga
ggaaaatatgattttgaccaggtcaaagatttcgcccatattctgatgaaacaggtcaat
gaaaagcttcccaaactgacgactctggaacgaagtttacagaaaagggatgataagaaa
atttatatggattatctacaaaacaggattggtcagaccttagcgagtgtctacagtgta
cgtccaaaagagggagccgccgtttctatgcccctggaatggaatgaagtgaaacctggt
ttgaagcctaccgattttacgatttataatgccctggaaaggattaagggcaagggagat
ttgtttaaaccggttttgggtaagggaattgatatgatgaaggtgttggaattgttgcag
aatggtgaataa
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