KEGG   Chryseobacterium carnipullorum: EG346_09160
Entry
EG346_09160       CDS       T06793                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccau  Chryseobacterium carnipullorum
Pathway
ccau03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EG346_09160 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccau03400]
    EG346_09160 (ligD)
Enzymes [BR:ccau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EG346_09160 (ligD)
DNA repair and recombination proteins [BR:ccau03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EG346_09160 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 DUF5655 mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AZA48340
UniProt: A0A376DME5
LinkDB
Position
complement(1991119..1992990)
AA seq 623 aa
MLTKSFEKAFDDEDWLFEIKWDGYRAVADLRHTNPLFYSRNGISFLSKFEKVTKDFSHQK
HKMVLDGEIVAYDAHGKPNFQLLQQIGDHPDMALTYQVFDLLWLNGHSTEKLPLVQRKEL
LKEALTETDIIKYCDHIPEKGIAFFNQMNTMKLEGMIAKKADSLYIENQRSSDWLKIKFT
NTDEAIICGLTEPRGSRESFGALILGKYTDGRLTYCGHTGTGFNNESLKQLYDRLQKMVI
KTSPFETVPTTNMPVTWTKPELVCEIKYSEITKDGMYRHPVFLAIREDKEPEEIQLNPKN
EKSKEMKAKAPLKKSANPEKEKEITLDKHQVHLTNQDKIYFPKDGITKGDVIEYYQSVAS
YILPFLKNRPLSLNRFPGGIEEQGFYQKDAGDNMPDWIKTTKVYSESNDKYIDYVYCNDK
ATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVVETALQVNEVLNSVK
VKGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVNEKLPKLTTLERSLQKRDDKK
IYMDYLQNRIGQTLASVYSVRPKEGAAVSMPLEWNEVKPGLKPTDFTIYNALERIKGKGD
LFKPVLGKGIDMMKVLELLQNGE
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgctgaccaaatcttttgagaaagcattcgatgatgaagactggctttttgaaattaaa
tgggatggctacagagctgttgccgatctacgtcataccaatcccctattctactcacgc
aacggaatttcctttttatcaaagtttgaaaaagttactaaagattttagccaccagaag
cataaaatggtcctggatggagaaattgtcgcttatgatgcgcatggtaaacccaatttt
cagcttttacagcagatcggggatcatcctgacatggcattaacctatcaggtttttgat
cttctctggctgaatgggcattcaacagaaaaacttcctcttgtgcaacggaaggaactt
ttaaaagaggctttaacggaaacggatattatcaaatactgtgatcatattccggaaaag
ggaatcgctttttttaatcagatgaatacaatgaaactggaagggatgatcgccaagaaa
gctgacagcttgtatattgaaaatcaaaggagcagtgactggctgaaaataaaattcaca
aatacggatgaagctattatttgcggattgacagaaccccgtggttcacgtgaaagtttc
ggagctctgattttgggaaaatatacagatggaagactgacttactgtggtcatacggga
acaggttttaacaatgaatctttaaaacaactttatgacagacttcaaaagatggttata
aaaacatcaccatttgaaacggttcctacaacgaatatgcctgtaacatggacgaaacct
gagttggtatgtgagattaaatattctgaaattactaaagacggtatgtatcgtcatcct
gttttcttggctatccgtgaagataaggagcctgaagaaattcaattgaatccaaagaac
gaaaagtctaaagaaatgaaagctaaagccccattaaaaaagtcagcgaatcctgaaaaa
gaaaaggaaattacattggacaaacatcaagtccacctcacgaaccaggataagatctat
tttcccaaagacggcattacaaaaggagatgtgatagaatattatcagtcggttgcttct
tatattcttccttttctgaaaaaccgtccactctctctcaaccgctttcccggtggcatt
gaagaacagggtttttatcagaaagatgcaggagataacatgccggactggatcaaaaca
acaaaggtctattcggaatccaatgacaaatatattgactacgtttattgcaatgataaa
gcaaccttagcctatctgaataatttaggctgtattgatctgaatccctggaacagttca
cttcctgatctggaacatccggattatctggtgctagatctggatccatccaagaaaaat
acattcgatgatgtggttgaaacagcacttcaggtgaatgaagttttaaattcagttaaa
gttaaaggatattgtaaaacttccggcagcacaggaattcatatttatattccgatggga
ggaaaatatgattttgaccaggtcaaagatttcgcccatattctgatgaaacaggtcaat
gaaaagcttcccaaactgacgactctggaacgaagtttacagaaaagggatgataagaaa
atttatatggattatctacaaaacaggattggtcagaccttagcgagtgtctacagtgta
cgtccaaaagagggagccgccgtttctatgcccctggaatggaatgaagtgaaacctggt
ttgaagcctaccgattttacgatttataatgccctggaaaggattaagggcaagggagat
ttgtttaaaccggttttgggtaagggaattgatatgatgaaggtgttggaattgttgcag
aatggtgaataa

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