Cynara cardunculus var. scolymus (artichoke): 112500836
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Entry
112500836 CDS
T05604
Name
(RefSeq) putative ABC transporter B family member 8
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112500836
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112500836
04147 Exosome [BR:
ccav04147
]
112500836
04090 CD molecules [BR:
ccav04090
]
112500836
Enzymes [BR:
ccav01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
112500836
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
112500836
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112500836
CD molecules [BR:
ccav04090
]
Proteins
112500836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA_22
Zeta_toxin
AAA_29
ABC_ATPase
AAA_21
AAA_30
DUF815
AAA_24
PRK
Motif
Other DBs
NCBI-GeneID:
112500836
NCBI-ProteinID:
XP_024960198
LinkDB
All DBs
Position
LG 17:complement(36770613..36777377)
Genome browser
AA seq
1241 aa
AA seq
DB search
MSSPTKSPEKTREEEEKKKSITIIFRYADWSDKLLIVLGTVGAIGDGMSTNVLLVYVSRL
FNSLGYGRGVQQKPENFMNEIGKCSLAFVYIGLGVMVMAFLEGYCWSKTSERQVLKIRYK
YLEAILRQEVAFFDSQEATTSEIINSISKDTSLLQEVLSEKVPKFLMHTSVFLSGLAFCT
YFSWRMSLVAFPTLIFLIIPGLIYGKYLLYLSKKSFHEYSKANSTVEQALASIKTVYSFT
AEKTIVQKYSTILDRTTEMGLKQGIAKGLAVGSTGLSFAIWALIAWYGSRLVMYKGESGG
RVYVAGLAFILGGLSLGMALPELNHFTEASVAASRIFHRIDRIPEIDGQDSNGLVPDNIH
GQIEFENIEFTYPSRPNCVILKDFNLKIEAGNTIALVGASGSGKSTAIALVQRFYNADRG
IIRVDGLDIKKLQLRWLRAQMGLVSQEHALFGTSIKENIMFGKIDATMEEVIAAATAANA
HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESEKLV
QNALDQASMGRTTLVVAHKLATIRNADVIAVMSEGRVIEQGSHNDLIDDNTGHYARLVKL
QRQFSSFNEHEQNTPVAARSSASRLSTSKSSPAMFDSPILLNDPQSLKSSNRPPPSFSRL
LALNSPEWKQGLIGSLAAIIFGAVQPVYALTIGGMISAFFVTNHEEMNTRIKNYSIIFCS
LSVISILVNLLQHYNFAYMGEQLTKRIRLKMLEKILTFETAWFDDEHNASGALCSRLSHE
ASMVKSLVADRMSLLIQTGSGVLIAMVMGLVVAWKLALIMIAVQPLTILCFYARKVMLSM
MSANFIKCQNQSTQIAVEAVYNHRIVTSFGSLGIVLQIFDKAQDGPRREARKKAWLAGIG
IDLAQGLTFICWALDFWYGGKLVDGGEISAGDVFKTFFILISTGKVIADAGSMTSDIAKG
STAVASVFSILDRQSLITSNIHVSQDENGTNGVKLEKLSGGIEIKKVDFAYPGRPETLIL
QEFCLEVKAGTSIGLVGKSGCGKSTVIALVQRFYDTDRGTVKVDRVDIRMLNIEWYRKHM
ALVSQEPVLYSGTIRDNIIFGKLDASENELIEAAKAANAHTFISSLKDGYDTECGERGVQ
LSGGQKQRIAIARAIIRDPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTVVVAHRLN
TIRNLDSIAFVSEGKVVEQGTYNQLKNKKGAFFQLANLQKA
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagttctccgacgaaatcaccggagaaaacgagggaggaggaggagaaaaagaagtcg
ataacgataatattccggtatgcggattggtcggataagctgttgatagtattgggaaca
gttggagccattggagatggaatgtcaacaaatgttttactggtttatgtgagtcgtctc
tttaacagcttgggttatggaagaggtgttcaacaaaaacccgaaaactttatgaatgag
atcggaaagtgcagcttagcttttgtgtacattggattaggagtcatggtgatggcgttt
ttggaagggtattgctggagtaaaacaagcgaacgacaagttctaaagattcgatacaag
tatttggaggcgattttgagacaagaagtcgctttttttgattcgcaagaagcaacaact
tcagaaatcatcaatagtatttccaaagatacatctctccttcaagaagtccttagtgaa
aaggtaccgaaattcttgatgcacacatcggttttcttatcgggactagctttttgtacg
tacttttcgtggaggatgtctttggtagcctttccaacgctaattttcttgatcattccg
gggcttatctacggaaaatacctcttatatttatcaaagaaatcgttccacgagtatagt
aaagcgaatagtaccgtggaacaagctcttgcctcaataaaaacggtttactcgttcacg
gctgaaaagaccatcgttcaaaagtactcaacgatcttggaccggacaacggagatgggt
ttgaaacaaggaatcgcgaaaggtcttgcggtcgggagtacggggctatctttcgcgata
tgggcgttgattgcttggtacgggagccgtttggttatgtataaaggagaaagcggtggg
agggtttacgttgccggccttgcttttatcttgggcggactatctcttggtatggcatta
ccagaactgaatcacttcacagaagcatcagtagcagcctctagaatcttccatagaatc
gaccgaatcccagaaatcgacggccaagacagcaatggactcgtacccgacaacattcac
ggacagattgaattcgagaatatcgaattcacatacccttctaggcctaactgcgttatt
cttaaagattttaacctcaaaatcgaagcaggaaacaccattgctcttgtgggagcaagc
ggaagtggcaaatccacggccatcgcgttagttcaaaggttttacaacgcggatcgtggg
attattcgtgtcgatggcctcgatatcaagaaactacaattgagatggctgagggcacaa
atgggactcgttagtcaagaacacgcgttatttggaacgtcgataaaagaaaacattatg
tttggaaagatcgacgcgacaatggaggaagtaatcgctgccgcaacggccgccaatgct
cataatttcatccggcagcttccggagggatacgaaacaaaggttggcgaaagaggagcg
cttctatccggtggacaaaaacagaggatcgcaattgcaagagcgatcatcaagaacccc
gtgattcttcttctcgacgaagctacgagtgcacttgattcggaatcggaaaaacttgtc
caaaatgcccttgatcaagcctccatgggaagaactacactggtcgttgcccacaagctt
gcaacaatccgaaatgccgatgtgattgcagtcatgagcgagggtagagttatcgaacaa
ggttcacacaacgatctgatcgatgacaacaccggtcattatgcaaggttagtgaaactt
caaaggcaattcagttcgtttaatgagcacgaacagaacacaccagtagctgcaagaagc
agtgcttcaagattaagcacttccaaatcgagcccagccatgttcgattcaccaatcctg
ctgaacgacccacaatcgttaaaatcctcaaaccgccctccgccttcgttttcccgactc
cttgctttaaattcaccggaatggaaacaaggcttgatcggcagtctcgcggccataatc
tttggagccgttcagccggtttatgcattgaccattggaggaatgatttcagcgttcttt
gtaacgaatcacgaagaaatgaacacccgaataaaaaattactcgataattttctgctcg
ctttcggtcatttccatcctcgtgaatctcttgcagcattacaatttcgcgtatatgggt
gaacaactaacgaagaggatccgattgaagatgctcgaaaagatcttgacgtttgaaacg
gcttggttcgatgacgagcataatgccagcggtgcgttgtgctctaggctaagccacgaa
gcttcgatggtcaagtcgcttgtagctgaccgaatgtcgctcttgatccaaactggctcg
ggtgtgttgatagctatggttatggggttagtcgtggcttggaagctagcactcattatg
attgcggtccagccccttacgatcttgtgtttctacgcacgaaaagtaatgttgtccatg
atgtcggctaacttcataaagtgtcaaaatcaaagcactcagattgcggtcgaggccgtt
tacaatcaccggatcgtgacttcgtttggaagtctagggatcgttcttcagattttcgat
aaggctcaagatgggccgagaagggaagcaaggaaaaaggcatggctagccgggatagga
atcgatttggctcaagggctaacatttatctgttgggcattggacttttggtatggcggg
aagctagtcgatggcggggagatatcggccggggacgttttcaaaacgttcttcatattg
atcagtaccggaaaggtaatagcggatgccgggagtatgacttccgacatagccaagggc
tcaaccgccgttgcttcggttttctccattctagatcgccaatcattgatcacgagcaat
attcatgtaagtcaggatgaaaatggaaccaatggagtaaagttggaaaaactaagtggc
ggaattgaaatcaagaaggtcgatttcgcgtacccgggcagacccgagaccttaatctta
caggaattttgtttagaagtgaaggccgggacaagcattggattagtcgggaaaagcggg
tgcgggaagtcgacggtaatcgcgttggtccagaggttctacgatacagatagaggtacg
gtgaaggtagatcgagtagatatacggatgctcaacatagaatggtacagaaagcatatg
gcgctcgttagccaagaacctgtcctatattcaggcacgattcgtgacaatatcattttc
ggaaaactcgatgcatccgaaaacgagttgattgaggccgctaaagctgcaaatgctcat
actttcatctcgtcattgaaagatgggtacgacaccgaatgtggagaaagaggtgtgcaa
ctttccggagggcaaaaacagaggatcgccattgcaagagccatcattcgagacccgaca
atcttactattagacgaggctacaagcgccctcgatgttcaatcggagcaggtcgttcaa
gaggcgttggatcggattatggtcggaaggacgactgtcgtggtggcacaccgactcaac
acgattcgaaatcttgactcgattgcattcgtttccgaaggaaaagtggtggagcaagga
acttataatcaactcaagaacaagaaaggggcattcttccaactagctaaccttcagaaa
gcataa
DBGET
integrated database retrieval system
