Cynara cardunculus var. scolymus (artichoke): 112506432
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Entry
112506432 CDS
T05604
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112506432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112506432
Enzymes [BR:
ccav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112506432
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112506432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
112506432
NCBI-ProteinID:
XP_024966231
LinkDB
All DBs
Position
LG 2:complement(9363557..9378999)
Genome browser
AA seq
1137 aa
AA seq
DB search
MSGETKFSVMCSLFNWIQKSKSSTKKRSKFRKFLDTYCKPTDYFAAVRLILPNLDRERGS
YGLKESVLATCIIDALGMSRESPDALRLINWRKGGAKTGVNAGNFSLVASEVLQRRQGMI
SGGLTIKELNDLLDCLASSENRTEKISVLSDLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCERLRDRHQRHKRQDIEVGKAVRPQLALRVANAASAWK
KLHGKEVVIECKFDGDRIQIHKNGEDIHFFSRNFLDHPEYIHGMSNIIIQNVLVDRCILD
GEMLVWDTSNERFAEFGSNQEIAKAAKEGLASERQLCYVAFDILYDGDTSVIHQSLKERH
ELLKKVVKPVKGRLEILVPDGGLNVHRTVGEPCWSQVAHNVDDVETFFKRTIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYVRAGADLDVLIIGGYYGSGRRGGQVAQFLVGLAERP
ASNTYPRRFISFCRVGTGLSDEELDAVVNKLKPYFRKYEYPKKGPPSYFKVTNNSKERPD
VWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDKVRDDKPWHECLDVESFVELVH
SSNHTTQWGGNYEKQQENKPKRSKSSRTADKKSSSVVPSHLLQTDVSQIKGETLIFSNMM
FYFVNVPPTHSLDSFHKMVAENGGTFSMNLNNSVTHCIAAESRGIKFQGAKNHGDVIHYS
WLLDCCSQKKLVPLQPKYFLVLSESSKKKLQEEIDEFSDAYYLDIDIKDMEQLLNNINRS
EDSKTIDYYTKKYCPLEKWSRFNGCCMYFYKPANCLGLDWEALLELTTRRIKLEVCFGGG
KVSSSISNATHLVVMSLPGFNVDFDTIVKSFSASERRLLRNKNLHIVDCQWLEDCSEKDL
MLQEEEYSMRPSGFIFTESTSSDEHKLEPETFSSLKKEDKDEKKNTVNIEVPTSDKYGRN
RGGKMRGRPINTKTSTRGRIGLNQRQRTRARSGNKAVKIHEHVSADDDDDDEVPVDESHV
KDDEKSWHEMQDVIAEDTEVVEKAINVSPNAKVTTEYSGKMADAAANKESDKLEVMVDPV
QAMLLDMIPSLEPKTENKTVVDPPVAKRGNPTLDSNPGPSKKKKVSYKDLAMELLKD
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggagacgaaattcagtgtcatgtgcagtctcttcaactggattcagaaatcc
aaatcttctacgaagaagagatctaagtttcggaaattcctcgatacgtattgtaaaccc
acagattacttcgccgctgtcagattaatccttcccaacctcgacagagagcgaggatct
tacggcttgaaggagtcggtgctagccacttgtatcatcgacgcccttggcatgtccaga
gaatctcctgatgctcttcgtctcatcaattggcgtaaagggggagccaaaactggtgtt
aatgccggcaacttctcactagtcgcttccgaggttctacagaggagacagggcatgatt
tctggtggactaactattaaggagttaaatgacttgcttgattgcttagcatcgagtgaa
aatagaacagagaagatttctgttctttctgatctgatcaagaaaacaaatgcacaagaa
atgaagtggatcatcatgattatccttaaagatctcaagttgggaatcagtgaaaaaagc
atcttccatgaatttcaccccgatgctgaagacttgtttaatgtcacttgtgacctaaaa
ctggtttgtgagaggttgagggatcgacatcaacggcacaagcgccaggatatagaggtt
ggaaaagctgtacgccctcaattggctttgagggttgctaatgcagctagtgcatggaaa
aagcttcatggaaaggaagttgtcattgagtgcaaatttgatggtgaccgtatccaaatc
cataagaacggagaagatatacacttcttttcgaggaattttcttgatcatccagaatat
atacatgggatgtcaaatattatcatccaaaatgttcttgttgacaggtgtatacttgat
ggggaaatgttagtttgggacacatcaaatgagcgttttgctgaatttggttcaaatcaa
gaaatagccaaggctgcaaaagagggacttgctagtgagcgacagttatgctacgtggca
tttgatattctctatgatggagacaccagtgttatccatcaaagcctaaaggaacgtcat
gagctgctaaagaaggttgtgaagccagtcaagggtcgtctggagatcttggttcctgat
ggcggtcttaatgttcataggactgttggggaaccttgttggtcacaagttgctcataat
gttgacgatgttgagacattttttaaacgaaccattgagaacagagatgaaggaattgtt
ttgaaagaccttggctccaagtgggaacctagtgatcggagtggcaagtggttgaagtta
aaacctgaatatgttagagctggagctgatttggatgttctcataataggaggatattac
ggctctggtcgtcgtggtggacaggttgctcaatttttggtgggcctggcagagcgccct
gcctcaaacacctatcctaggcggttcatttccttctgcagagtgggtactggactctct
gatgaggagctcgatgctgttgtaaataaattaaagccttattttaggaaatacgaatac
ccgaagaagggtccccctagctatttcaaggtcacaaataactcaaaagagagaccagat
gtctggattgatagtcctgagaaatcaatcatactttctatcaccagcgacatccgtaca
attcgctctgaggtttttgctgctccgtacagcttgaggtttcctcgaatagacaaagta
agggatgataaaccttggcatgaatgccttgatgtggaatcttttgtagaactggtgcat
tctagcaatcatacgacgcaatgggggggaaattatgaaaagcaacaggaaaataaacca
aaacgatcaaaatcatcaaggactgcagataagaagagtagttctgtcgttccttctcac
ctccttcagactgatgtttctcagattaagggagagaccttgatattttcgaatatgatg
ttttactttgttaatgtacctccgacacattctttggattcatttcataaaatggtggca
gaaaatggtggtaccttttcaatgaatttgaataactcggttactcactgtattgctgca
gagagtagagggatcaagtttcaaggtgcaaagaaccatggtgatgttatccactactcg
tggctgcttgattgttgttcacagaagaaacttgttcccttacaacccaagtatttcctt
gtcctttctgagtcttccaagaagaaattacaggaagagattgatgaattttcggacgct
tactacttggatattgacattaaagatatggaacagcttttgaataacatcaatagatcc
gaggattctaaaaccatagactattatacgaagaaatactgtcctttggaaaaatggtcg
cgcttcaatgggtgctgcatgtacttctataagccagcaaactgcctgggtttggattgg
gaagctttacttgaacttacaacgaggaggataaagctcgaagtttgctttggtggtggc
aaagttagcagttctatctctaacgctactcatttggtggtcatgtctttgccaggattc
aatgtggactttgatactatcgtaaaaagtttctcagcatcggagaggcgtctgttaagg
aacaaaaatttacatattgttgactgtcaatggttagaagactgttccgaaaaggacctg
atgctgcaagaggaagaatacagtatgagaccatctggttttatttttacagaatcaact
tcatccgatgaacataaactcgagccagaaaccttctcaagcttgaaaaaagaagataaa
gatgagaagaaaaacacagttaatatagaagtaccgacttcagataaatatggcagaaat
agaggggggaagatgagagggagaccaattaacacgaaaacaagtactagaggaaggata
ggtttgaaccagcgtcaaagaaccagggcaagatctggcaacaaggctgtgaaaatacat
gaacacgtatccgccgatgatgatgatgatgatgaggttcctgtagatgaaagccatgtg
aaggatgatgaaaagagttggcatgaaatgcaagatgtcattgcagaagacacggaagtc
gtagaaaaagccattaatgtatctcctaatgcaaaagttaccacagaatatagtggcaaa
atggccgatgctgctgctaataaagaaagcgataaactggaagtcatggttgaccctgtt
caagccatgttgctagatatgatcccgagcctggagccaaagaccgaaaacaaaaccgtt
gtggatccgcctgttgccaagagaggaaacccaactttggattctaatccagggccttca
aagaagaagaaagtcagttacaaggatttggccatggagctgctcaaagattag
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