Cynara cardunculus var. scolymus (artichoke): 112511224
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Entry
112511224 CDS
T05604
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccav03016
]
112511224
Enzymes [BR:
ccav01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
112511224
Transfer RNA biogenesis [BR:
ccav03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
112511224
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Wyosine_form
Flavodoxin_1
Radical_SAM
Flavodoxin_5
Motif
Other DBs
NCBI-GeneID:
112511224
NCBI-ProteinID:
XP_024972522
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Position
LG 4:complement(13917037..13926055)
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AA seq
664 aa
AA seq
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MSSTGTATATRISTTSLTTHLTVLAFLSATTLYCFYRSRRLRHLKLSPSSSNPSLSSATR
KGKLFFISQTGTSKTLAQRLAKLLASNNLPFDLVDPNSYEPEDLHQETLVLIIASTWEDG
NPPSNGVFLSNWLSESAEDFRVGSLLLSKCKFAVFGVGSSAYGDNFNAVARGFSTKMRCL
GAMEILPLCEGDVDEGELDKAFGIWSKEVIRVLKVGELSGNGSDLIGENGNENGYEMING
SDYDEDDDYEDEDEENGAESDIVDLEDIAGKAPSKKDVGVITSNGKKNGVKEMVTPVIRA
SLTKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVF
CWRHHTNPVGKSWQWKMDDPLLIVNSAIEQHKKMIKQMKGVPGVTAERLSEGLLPRHCAL
SLVGEPIMYPEINSLIEELHQRRISTFLVTNAQFPEKIVSLTPITQLYVSVDAGTKDSMK
AIDRPLFGDFWERFVDSLKALRDKQQRTVYRLTLVKGWNTEDVDAYSSLFGIGNPDFVEI
KGVTYCGTSATSKLTMDNVPWHADVKAFSEALAEKSNGEYEVACEHVHSCCVLLAKVDKF
KIDGQWHTWIDYEKFHDLVASGEPFGSNEYMAPTPSWAVYGANEGGFDPEQARYKKERNH
KSSR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaccggaaccgccaccgccaccagaatatccaccacctctcttacaacacat
ctaaccgtcctcgctttcctctccgccaccactctctactgcttctacaggtcccgccgt
cttcgtcaccttaaactctccccatcttcctcaaaccctagtctctcctccgctactcga
aaaggaaaactcttcttcatttctcaaacaggcacctcaaagactctagctcaacgtctc
gccaaactcttggcctccaataaccttccatttgaccttgttgaccctaactcatatgaa
cccgaagacctccatcaagaaaccctagttttgattatcgcatccacatgggaagacgga
aatccgccgtccaacggcgttttcttgtcgaattggttgtcggagagtgccgaggacttc
agagtcgggtctctgttgcttagtaaatgcaaatttgctgtatttggagttgggagcagc
gcttatggagataattttaacgcagttgcgagagggttttcaacgaaaatgcgctgtctt
ggcgcaatggagattttgcctctctgtgaaggggatgttgatgagggtgagttagataag
gcctttggtatttggagtaaagaagtgattagggttttgaaagtaggcgagttgagtgga
aatgggagtgatttaatcggagaaaatggcaatgagaacggttatgagatgatcaatgga
tcagattatgacgaagatgatgattatgaggatgaagatgaagaaaatggagcggaatct
gatatcgtcgatttagaagatattgctggcaaagcaccttcaaagaaagatgtgggagtg
attacgagtaatggaaaaaagaatggggtgaaagaaatggtaactcctgtgatcagggct
agcctgacaaagcagggttataagatcattggttcacacagcggtgtcaaaatatgtagg
tggactaaatcgcaactcagagggcgtggaggttgctataaacactctttttatggaatc
gagagtcacaggtgcatggaggcaacaccaagtttggcatgtgcaaataaatgtgttttc
tgttggagacatcacacgaatcctgttggaaaaagttggcagtggaagatggatgaccca
ttattgattgtgaattctgccatagaacagcataagaaaatgataaagcaaatgaaagga
gttccaggtgtcacagcagagcgcttatcagaaggcttgttacccaggcattgtgccttg
tcacttgttggggagcctatcatgtaccctgagatcaattcacttatagaagagctccac
caaaggcgaatttccacctttcttgtgacaaatgcacagtttcccgagaagattgtgtca
ctaacacccatcacacagttatatgtcagtgtagatgctggaacaaaggacagcatgaag
gcaattgacagaccactcttcggggacttctgggaacggtttgttgattcactgaaagct
ttgagggataagcaacagcggactgtgtatcgtttgacactcgttaaaggatggaacaca
gaggacgtagatgcatattctagcctctttggcattggaaaccctgattttgttgaaatt
aaaggtgttacctattgtggaacgtctgctacttcaaagttgactatggacaacgtgcct
tggcatgcggatgtgaaagctttttcggaggccttggctgaaaagagcaatggggagtat
gaggttgcttgcgagcacgtgcactcttgttgtgttcttcttgcgaaagtcgataaattc
aagattgatggtcagtggcacacatggattgactacgagaagtttcatgacttggtggct
tcgggagaaccttttggcagcaacgaatacatggcccctactccatcttgggcggtctat
ggagctaacgaaggcgggtttgatccagaacaggctcggtataagaaagaaaggaatcac
aaatcaagccgttga
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