Cynara cardunculus var. scolymus (artichoke): 112512348
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Entry
112512348 CDS
T05604
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112512348
03015 mRNA surveillance pathway
112512348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112512348
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112512348
mRNA cycle factors
P-body specific factors
112512348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
112512348
NCBI-ProteinID:
XP_024974025
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All DBs
Position
LG 5:complement(25849303..25864803)
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AA seq
506 aa
AA seq
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MKGPLDRTKVVLRHLPHTISQSALMEQIDARFSGRYNWFCFRSGKQSLKCQSYSRAYIDF
KRPEDVIEFAEFFDGHVFVNEKGTQYKTIVEYAPSQRVPKQWSKKDGREGTIGKDPEYLE
FLEFVSKPVENLPSAEIQLERKEAERAGAAKEAPIVTPLMDFIRQKRAAKGGPRRSLPNG
KLMRRAGASSSSSSSSIVKRGSEKRMTSTMYVLRDSGKSTNVKDKSAYVKRDDRQVSEKS
LSSSAASGSVLQEEERGAFGASDTGKKKILLLKGKEKEIPHVTTGLTPQQNSSSVKLAYG
SGAGRQNQRHEASGRIIRSILLNKDTRQSQASAVQSEQNQTLNQDKDRRPPRPQNMPLLK
DSNGLPDDKVHGHDLHGFYSEKQDKRSRNRDKPDRGVWTPLRRSDGPHASDESLSSSTSQ
STQVLPDSAEVTRGEAKYDLSNERGGHFSADNGSHKHSGRRISSHNAKDADGPSNLSEGK
PPKKGVSAGYGSHEKRVWVQKSSSGS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtccgttagatcgaacgaaagttgtgcttcggcacttgccgcatacgatttcc
cagtcggcgctcatggagcaaattgatgcccgtttttccggtcgctacaactggttctgt
ttccgttctggcaagcagagcctgaagtgtcaatcatattccagagcctatatcgacttt
aagcggccagaggatgtcattgagtttgcggagttctttgatgggcatgtttttgttaat
gagaagggtacccaatataaaacaattgttgagtatgcaccttcacagcgtgttccaaag
caatggtctaaaaaagatggacgtgaagggaccataggaaaagatcctgaatatcttgaa
ttccttgaatttgtttcaaagcctgtcgagaatcttcccagtgcagagatacaattggaa
aggaaggaagctgagcgtgccggtgctgctaaggaggctcctatagttacgcctttaatg
gatttcattcgccagaaacgagctgccaagggtggaccccggaggtctttgcctaatggg
aaattaatgagacgagctggtgcatcatcttctagttcaagctctagtatagtgaaacgt
ggttctgaaaagaggatgacttctaccatgtatgtcctaagggatagtggaaagagcaca
aatgttaaagataagtcagcctatgttaaacgagatgatcgtcaggtttctgaaaagtct
cttagttcatctgctgcatctggaagtgtattacaggaggaagaaaggggtgcttttgga
gcctctgatactgggaagaagaaaattctgctgttaaaggggaaagaaaaggaaattccc
catgtgaccactggcttgacacctcagcagaactcatcttctgttaagcttgcttatggt
tctggtgctggcagacagaatcaacgacacgaggctagtggaaggatcatcagaagcata
ctccttaacaaggatacacgccaaagtcaggcttctgctgttcaatctgaacagaatcag
actttgaatcaagataaggacagaagaccacctaggccacaaaacatgccacttttgaag
gactcaaacggtttaccagatgataaggtccatgggcatgatttacatggcttctacagt
gaaaaacaggataagcgttctaggaatagagacaaacctgatcgtggtgtttggactccc
ctccggcgatctgatggaccacatgcaagtgacgagtccctgtcatcttccacttctcaa
tctacacaagtgctaccagattctgcagaagtaactcgtggagaagcaaagtatgacctg
tcaaatgaacgtggtggtcatttttctgctgataatggctcccataaacacagcggtcgc
cgcatatcctcacacaatgctaaggatgctgatggcccgtcaaatttaagcgaaggaaaa
cctccgaaaaaaggtgtttctgctggctatggttcccatgagaagcgcgtgtgggttcaa
aagtcgagttctggttcttag
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