Cynara cardunculus var. scolymus (artichoke): 112520510
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Entry
112520510 CDS
T05604
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112520510
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
112520510
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_29
ABC_tran
AAA
MC7
Motif
Other DBs
NCBI-GeneID:
112520510
NCBI-ProteinID:
XP_024984724
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All DBs
Position
LG 10:complement(9795814..9818043)
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AA seq
1061 aa
AA seq
DB search
MHRQNIDLNAFLILLCNLCFFSRGADDYLPGNIVEIEIHNFMTFNHLVCKPGSRLNLVIG
PNGSGKSSLVCAIALGLGGEPQLLGRAATVGAFVKRGEESGYTKISLRGDTPDEKIIIMR
KIDARNKSEWLFNGRAASKKEITELIQKFNIQVNNLTQFLPQDRVCEFAKLSPVRLLEET
EKAVGDPQLPVLHRALVDTSAELQRSEQAVEKNRETLSQLKALNAEQERDVERVRQRDEL
LAKAESMKKKLPWLKYDMKKATYLEAKDQEKEAKKKLDAAAKLLNELREPIEKQKLEKKE
QDTKCKKIRDLLDNVETSHKQMLEKENQLCLKVKGRYHDMEEMERQEHSRQERIIKAEKD
LTGAELELQNLPPFEPPRDKIEKLGAEILELEASAREKRHQKKEKEKLLDRNRALARQSA
ERLREMENIKNKRLQALRNSGAEKISDAYSWVQSHRHEFKREVYGPVIMEVNISNQLHAA
YLESHVPYYIWKAFITQDSADRDYLFKNLRSFDVAVINHVADAGRIPEPLHISQEMSSMG
IYSRLDQVFDAPYAVKEVLIGQSGLEHSYIGSKKSDENADMAHSFGVMDLWTPDNHYRWS
KSRYGGHVSASVEAVGDSRLLLSNTDGEELNTLRGKNKELVETISVLEASFKSLQSEIKE
LEDAQAQLQKQRENLVNEAQHEKRKQRELQNRVNQKRLKLQSLRREEDAAIVMSKLVEDV
ENLNIQRFKCVLEIKNLLTQATAHRKNYAEKFMASIELELKIKEMEASIKQQEKLALQAS
LHFENCKKDVEDHRQQLAAAKKVAESVAVITRALEQEFLQLPSTIEELNAAIQDITSQAN
SILFLNHNILEEYEHRQRKIKELSTKLESDEKGLATRLNELNSLKEKWLPTLRNLVAQIN
ETFSRNFQEMAVAGEVSLDEHGNEFDSYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTI
LYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLSDLE
YGESCTILTVMNGPWIDQPSEVWKLGGSWGSVMGLLGESHC
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgcataggcaaaatattgatcttaatgcttttttgatcttactttgtaacttatgtttc
ttcagtaggggggccgatgattatttgcccggaaatatagtggagattgaaattcacaac
ttcatgacttttaatcacttggtttgcaagccgggttctcgtttgaaccttgtcatcgga
ccaaatgggtctggtaaaagctctttggtgtgcgcaatcgctcttggtctgggaggcgaa
cctcagcttcttgggagggctgcgactgttggtgcatttgtcaagcggggggaggagtct
ggttatactaaaatttccttgagaggtgacactccagatgagaagattatcataatgcgt
aaaatagatgcacgtaacaagtccgagtggctatttaatggcagagctgcttctaaaaag
gagattactgaactaatacaaaagttcaatattcaagtcaacaatcttactcaattctta
ccgcaagatagggtgtgtgagtttgctaaactatctccagtgagacttctagaggaaaca
gagaaggctgtaggtgatcctcaacttcctgtcctgcatcgtgctcttgttgatacaagt
gcggaattgcagagatccgaacaggctgtcgagaagaacagagaaactctaagtcagcta
aaggcacttaatgctgaacaagaaagagacgtggagcgtgttcgtcaacgggatgaactt
ctagcgaaggcggaatctatgaaaaagaaattgccatggctgaaatatgacatgaagaag
gccacgtatcttgaagctaaagatcaggagaaggaggcaaagaagaaactcgatgccgca
gccaaattgctaaatgaacttagagagcccattgagaagcaaaagctggaaaaaaaggaa
caggataccaaatgcaaaaaaatcagagacctccttgataatgttgaaacgtcacacaag
caaatgctggagaaagaaaatcagctgtgtcttaaagtgaaaggaaggtaccatgacatg
gaagaaatggagaggcaagaacactcacggcaggagagaatcattaaagctgaaaaagat
ctcacaggtgcagaattggaactgcaaaaccttccaccctttgaacctcctagagataaa
attgaaaaattaggggcagaaatattagagttggaagcatctgcaagagagaagagacac
caaaagaaagaaaaggagaaacttttagatcgaaatagagcgttagcaagacaatctgca
gaaaggttaagggagatggaaaatattaaaaacaaacgtttacaggcattacggaattct
ggagccgaaaaaatatctgatgcttatagttgggtacaatcccaccgacatgaatttaag
agggaggtttatggtcctgttataatggaggtcaacatctcaaaccagcttcatgctgcc
tacttagagagtcatgttccgtattacatatggaaggcttttataactcaggattctgct
gaccgtgactatttgttcaagaaccttaggtcatttgatgttgcagtcataaatcatgtg
gctgatgcaggccgcattccagagccgttgcatatatctcaggagatgtcatccatggga
atatattcaaggcttgatcaagtttttgatgctccgtatgcagtcaaagaggtcttgatt
ggacaatctggtctagaacattcatacatagggtctaaaaagagtgatgaaaatgcagac
atggcccatagttttggtgtaatggatctttggactcctgacaatcactatcgctggtct
aaatccagatatggtggtcatgtttcagcatctgtggaagcagtgggtgactctcgtctt
cttttgtctaacacggatggtgaggaattgaacacgctcaggggaaagaacaaggagttg
gtcgagaccatctctgttctagaagcaagtttcaagtcacttcagagtgaaataaaggag
ttagaagatgcacaagctcaacttcagaaacaacgtgagaatcttgttaacgaagcacag
catgagaaaaggaaacaacgtgagctacaaaaccgagttaaccaaaagaggttaaaacta
caatcactgagaagggaagaagatgcggctattgtaatgtcaaagctcgttgaagatgtt
gagaacttgaatatccagagatttaaatgtgtattggaaattaagaatcttctcactcaa
gctactgctcacagaaaaaattatgctgagaagttcatggcctccattgaacttgagttg
aagattaaagagatggaagcgagtatcaagcagcaagaaaagcttgcattgcaagcttct
ttacattttgaaaattgtaagaaggatgtggaggaccatcgacaacaattggcagctgcc
aagaaagttgcagaatcagtggcagttattactcgtgctcttgaacaggaatttcttcag
ctaccttcgaccattgaggaattgaatgctgcaattcaagatattacctctcaagccaat
tctattctctttctgaaccacaacattttggaggaatatgagcaccgtcaaagaaaaatc
aaggagctctcaacgaaactggaatcagatgaaaaaggattggctactcgtttaaatgaa
ttgaattctttgaaggagaaatggctcccgacacttagaaacctagttgctcaaataaat
gagacatttagcaggaattttcaagaaatggctgttgcaggagaggtttcattggatgaa
catggtaatgaatttgatagctatggaattcttattaaagtgaagttcaggcaagcagga
caacttcaagttctaagtgctcaccaccaatctggaggggaacgatcggtttcaacgatt
ctttaccttgtttcactacaagacctcacaaactgcccatttagggttgttgatgagatt
aatcaaggaatggaccctattaatgaaaggaagatgttccagcaattagtcagagctgca
agccaaccaaatacaccacagtgtttcttgcttactccaaaactgctatctgatttggaa
tatggcgagtcatgtacgattctgacagtgatgaatggcccgtggattgaccaaccgtca
gaagtatggaaacttggaggaagttggggctctgttatgggattgttgggggaaagccat
tgctaa
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