Cynara cardunculus var. scolymus (artichoke): 112523175
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Entry
112523175 CDS
T05604
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112523175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112523175
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112523175
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112523175
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112523175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112523175
NCBI-ProteinID:
XP_024988431
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All DBs
Position
LG 12:6128248..6139298
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AA seq
954 aa
AA seq
DB search
MEGASFLSSRSIGYRPAPNDSVAALASNNNQKSLTPILDRFKVLLKQREEEIRVSSGGDD
DIESPVLSTEEIVELYEDVLSELIINSKPIITDLTIIAGEQRGHGAGIADAICARIIEVP
VEQKLPSLYLLDSIVKNIGREYVRHFSARLPEVYCAAYRQVHPSLHPSMRHLFGTWATVF
PSSVLRKIETQLQFSPPSSYQSSGLKDSESPRPAHGIHVNPKYLEARRQLESSTADSKIQ
HARANSAPKILGQPCTGFDEYESDNGEQSLGSTSHIARPLFGLSHARPPSPALEEFAIAD
SPRRVVEGASPSYHGYGYRPGGVTAGDDEPRDWRRSHLSGASRQLEASTTHSVSNGFDIQ
RPRDLINAYGTDERNKTTNQKLQHVKNLTINGLGSKVGGQTWQNAEEEEFEWEDMSPTLA
DRGRGGDLFSLPGSSKAGHARGANRSIPTKTDFGRRDWSSQELLPSVAPNNRVSLPERGL
KRKIAGFQNEASDIPVPHYPQESSNLSHDQPWGAQHHYNPHGRRPPPLIDSFLGANPQHH
LSSLPRLNSSSHGMMNPEASIPASKGAWRPQVNIQKSQPLPVLPSLSFQKHGRSQFDTLN
ASNSAVNDNSSFLHQQQFDTSESRLSSQLPQLPNQQAGFAPHQQIPGQNTRFSSQDLRNM
VSTTLGFNPSHLASRPMIRGYTPQRFDGSGGASLNPVPGMQSSMPFHLHGVGVPPLPPGP
PPIPQLPLSIGPTQPGGGALSGLFSSLVAQGLLSLTKTPEQDSVGLEFDPDVLKTRHESA
IIALYADLPRQCKTCGRRFKLQEEHSSHMDWHVTKNRVSKSRKQKPSQKWFANVSLWLSS
AEALGTDPVPGFLNQSENVVEKKDDEDMAVPADEDQNVCALCGEPFDDFYSDETEEWMYR
GAVYMNAPSELTVGMDRSRLGPIVHAKCRSESTVAPPDDSGNNERVFNEDRMRS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgcgagttttttgagtagtagaagtatcggatacaggccagcgccgaatgat
tccgtcgcggcgttagcgagtaacaataatcagaagtcattaactccgattcttgatcgg
ttcaaggttttgttgaagcaaagggaggaagaaattagggtttctagcgggggagatgat
gatattgaaagtccggtgcttagtactgaagaaattgtggagttatatgaagatgttttg
tcggagttgattatcaattcgaaaccgattattactgatctcacgataatcgccggagag
cagagaggacatggtgcaggcattgcggatgcaatttgtgctcgaattattgaggttcca
gttgagcaaaaacttccttctttatatcttctggatagtattgtcaaaaatattggtaga
gagtacgtgagacacttttctgcccgcttgcctgaggtctattgtgcggcatacagacaa
gtgcacccaagtctgcatccttccatgcgacatctttttggtacgtgggcaacagtgttc
ccatcttctgttctccgcaagattgaaactcaactacaattttcccctccatcaagttat
caatcttctggtttaaaagattctgaatctccaagaccagctcatggtatacatgtcaat
ccaaagtacttggaggcaagacgtcaacttgaaagctccactgcagatagtaaaattcaa
catgcaagagcaaattcagctcccaagattcttggacagccttgcactggatttgatgaa
tacgaatctgataacggggaacagtcattgggctcaactagtcatatagctcgtccgctt
tttggtctttctcatgccagacctccatcaccagctcttgaagaatttgctatagccgat
tctcctagaagggttgttgaaggagcatcaccatcatatcatggatatggttatagacct
ggtggtgtgacagccggagatgacgaaccacgtgactggcggagatcccatctttctggt
gcctcacggcagcttgaagcttctacaacacatagtgtaagtaatggattcgatattcag
agacccagggatttgattaacgcttatggaacagatgaacggaataaaacgacaaaccag
aagcttcaacatgtgaaaaacttaacgataaatgggttaggcagtaaggttggtggacag
acatggcaaaatgctgaagaagaggagtttgagtgggaagatatgagtccgactttagca
gatcgtggtcgtggtggtgatttattttctttaccgggtagctctaaagcgggtcatgcc
cgtggagccaaccggtctatacccacaaagactgatttcggcagacgggattggtctagc
caggagctgcttccttcagttgcccccaacaatagagtttccttgcctgagcgtggatta
aagcggaagattgctggattccaaaatgaggcttcagatattccagttccacactaccca
caagaatcatcaaatctttctcatgaccagccatggggagctcagcatcattataatcct
catgggcgaaggccgcctcctctcatcgatagctttctaggtgccaatccacaacatcac
ttgtcttcgttgcccagattgaattcatcaagtcacggtatgatgaatcccgaggcatct
ataccagcatcaaaaggagcttggcgaccccaagtaaacatacaaaaatctcaaccactt
cccgttctgccttctctctcatttcagaaacatggtaggagtcagtttgacacgttgaat
gctagcaattcagcagtaaatgacaattcgtcgtttttgcatcagcagcagtttgatact
agtgaaagcagattgtcgagccaactacctcaactccctaatcagcaggctgggttcgcc
ccccatcagcaaatcccgggccagaacactaggttctcatctcaagatcttcgaaatatg
gtatcaaccactttaggttttaacccatctcatctagcatcgcgacccatgatacgtggg
tatacccctcaaagatttgatggctctgggggggcttccttgaatccagttccaggaatg
cagtcatcaatgccttttcatttacatggcgtaggtgtgcctcctttacctccaggcccc
cctccgattcctcaacttcctctatcaattggcccgacacagccaggtgggggcgcactt
tctggtttatttagttctcttgtggcccaaggtctgctctcactgaccaagactcctgaa
caggattccgttgggcttgagtttgatcctgatgttctcaagacacgtcacgaatctgca
ataattgcgttgtatgctgatctgcccagacaatgcaaaacatgcggtcgccggtttaaa
ttgcaagaagaacacagtagtcatatggattggcatgtgaccaagaatcgggtatcgaaa
agccgcaagcaaaagccctctcagaagtggtttgctaatgttagtttgtggcttagtagt
gcagaggcattgggaaccgatccagttccgggatttcttaatcaatctgagaatgttgtc
gaaaagaaggatgatgaggatatggctgttccagctgatgaggatcagaatgtctgtgca
ctatgtggagaaccgtttgatgatttttacagtgatgaaacagaagaatggatgtataga
ggtgctgtctacatgaatgctccgtctgaattaactgtaggcatggatagatctcggcta
ggccctatcgttcatgctaaatgcagatccgagtcgactgtggctcctcctgatgattct
ggcaacaatgaacgggtatttaacgaagatcggatgcgtagttag
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