Cynara cardunculus var. scolymus (artichoke): 112523203
Help
Entry
112523203 CDS
T05604
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03022
Basal transcription factors
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112523203
09124 Replication and repair
03420 Nucleotide excision repair
112523203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112523203
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112523203
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112523203
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112523203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
112523203
NCBI-ProteinID:
XP_024988483
LinkDB
All DBs
Position
LG 12:complement(20156612..20175406)
Genome browser
AA seq
452 aa
AA seq
DB search
MPQVRIIAKNFMDMVASLPAMKLDRLYENAFICEAILRSLPPLAKKYVLQLLYIDAPVTA
SSLQEWVLVDGATKHRVAVDRLIQLRIFTETVDRKKEATYKLNLMFQMNLRKHIVHGGVL
PREPMAANITVRLPSLEELDNYASQQWECFLLHLINSAEVEVTTKSISLSMMKVFQRGLL
SQRDNEGPRLTESGFQFLLMDTNAQLWYIVREYISNSEDRGVDSADLISFLLELSFHVTG
EAYNMNTLTDIQRTTVKDLADLGLIKLQQGRKDSWFIPTKLATNLSISLSDASSRKQGYV
VVETNFRLYAYSTSKLHCEILRLFARIEYQLPNLIVGSITKENLYKAFSNGITADQIISF
LQQNAHPRVAERVPSVPENVTDQVRLWESDLNRVEMTPAHFFDDFPSRDVFEAACDFARE
YSSLLWEDSKKMRLLVKTEIYSHMKEFLSHQK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaggattatagccaagaacttcatggacatggtggcctcgttacctgcc
atgaagctcgacaggctatacgaaaatgcctttatctgtgaagctattctcaggtctttg
ccaccactggccaagaagtatgttctccaattattgtatatagatgctcctgtgaccgcc
agttcattgcaagagtgggttcttgttgatggtgctacaaagcatagagttgctgttgat
aggctcatccagttgagaatctttactgaaactgtcgataggaagaaggaagccacttac
aagctaaacttgatgtttcagatgaacctccggaagcatattgttcatggtggtgtgttg
ccaagggaacccatggctgcaaatataacagtaagactcccaagcttagaggagctagac
aactatgcttctcaacagtgggagtgtttcttgctgcatctcataaactctgctgaagtt
gaggttacaaccaaaagcatcagcctttctatgatgaaagtcttccaacgaggcctttta
agtcaaagggacaatgaaggtcctcgacttacagagagtggctttcagtttctgctgatg
gacaccaacgcacaactctggtatatcgtcagggagtatatcagtaattctgaggataga
ggtgtggattcagcagatcttatctcatttctgctggaacttagctttcacgttactggc
gaggcatataatatgaacactttaactgatatacaaaggacaacagttaaagaccttgca
gacttgggactcatcaaactccagcaggggaggaaagacagttggttcatacctactaaa
ttggctaccaacctctctattagcctgtcagatgcatcatcaaggaaacagggatatgtc
gtcgtggaaacgaacttcaggctttatgcctactcaacctctaagttacattgtgaaatc
ttaagactctttgcaaggatagaatatcaacttcctaaccttattgttgggtccattaca
aaagagaacctgtacaaagccttttcaaatggcattacagcagaccagataatttcattt
ctccagcagaacgctcatcctcgtgtagcagaaagagtgccgtctgtaccagaaaatgtc
acggatcaggttaggctgtgggaatcagatctaaatagggtagagatgacacctgctcat
ttctttgatgattttccatcaagggatgtgtttgaagcagcttgtgattttgcaagagaa
tacagcagtttactgtgggaagactcgaaaaagatgcgccttctagtcaaaaccgaaatc
tattcacacatgaaagaatttctgagccatcaaaaatag
DBGET
integrated database retrieval system
