Cynara cardunculus var. scolymus (artichoke): 112525249
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Entry
112525249 CDS
T05604
Name
(RefSeq) putative multidrug resistance protein
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112525249
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112525249
04147 Exosome [BR:
ccav04147
]
112525249
04090 CD molecules [BR:
ccav04090
]
112525249
Enzymes [BR:
ccav01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
112525249
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
112525249
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112525249
CD molecules [BR:
ccav04090
]
Proteins
112525249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
RsgA_GTPase
AAA_29
AAA_22
Zeta_toxin
AAA_21
ABC_ATPase
AAA_16
DUF87
AAA_15
SbcC_Walker_B
G-alpha
nSTAND1
TMEM70
MeaB
Motif
Other DBs
NCBI-GeneID:
112525249
NCBI-ProteinID:
XP_024991058
LinkDB
All DBs
Position
LG 13:complement(1243692..1249228)
Genome browser
AA seq
1266 aa
AA seq
DB search
MFGAYIQLTFRVERGFTDMMRKGGMFHFADGTDKLLLLFGTLGCIGDGLMSPLTMVILGG
IIDDYGSGDLTFSNDVVDKYALKLLILAIGVAVSAFIEGICWTRTAERQTSRLRIEYLKS
VLRQEVSFFDTQVGSSTNFEVISAISGDAQLIQDVMADKIPNCLAHLSALVFSIIVSFIL
SWRLAVASLPFALLFVVPVLGFGASLQGLGMKMKDAYDTGGGVAEHAISSIRTVYSYVGE
HQTINKFSHALQTSMALGIKQGFTKGLMIGSMGMVFVAWAFISWVGSYLVTEKGETGGRV
FVSAICVIMAGLSAMSALPNVTFISEAIAATKRMFKMISRVPLIDSDNWTGKTIASVRGD
IEFRGVDFSYPSRPDTPILQKLNLKVKAGKTIGLVGSSGSGKSTIISLLERFYDPVKGDI
LLDGHRLKGFQLKWLRSQMGLVNQEPVLFATSIKENILFGKEGVSAEMVEIAAKAANAHD
FIIKLPDAYETQVGQFGIQLSGGQKQRIAIARALLKEPRILLLDEATSALDTKSERVVQE
ALDQASIGRTTIIVAHRLTTIRKADKIVVLWSGKVIESGTHDELMHKNNKKEGGAYYQMV
LLQQSATHNESGSPDSLYPPIRQQPHGRDFNPQFARSPIGARSSLQNSPMSPFCPTVIMS
MAHSVQMYSYQESDGEYLSDIPDRSPSQWRLLQMNAPEWKRAFLGCLGATGFGAISPIHA
YCLGSVVSVYFLPDKAKVKSDTAFYCIIFVVLGVVCFVANLLQHYNFAVMGERLTKRVRE
KMLGNILTFEVGWFDKDENTSAAICARLATEASLIRSLVGDRISLLLQVFVSAFLAFIIA
LIITWRVAIVMISVQPLLIASFYSKTVLMKSMSTKAKKAQNEGTQLASEAVVNHRTITAF
ASQQRIVRLYAETQKGPRKECIKQSWFSGLGLFTSQFVTTAAISLAYWYGGREMNKGLVT
AKQMFQVFFILMTTGKNIADAGSMSSDLSKGGGAVKSVLAVLDRKTEIDPDDSEGLKVRR
INGHIELMNVHFSYPSRPEQMIFQGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPI
KGCILVDARDLKNYNLRHLRSHIALVSQEPTLFAGSIRHNIIYGKEEASEAEIMKAAKLA
NAHEFISSMNDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSASEN
LVQEALEKMMVGRTCVVVAHRLSTIQKSDSIAVIENGKVAEQGSHSELLSMGNMGSYHSL
IKLQHI
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgcatatatacagttaactttcagagtagagagaggattcactgatatgatg
agaaaaggtggaatgtttcattttgcagatggcacagataagcttcttttgttatttggt
accttaggatgcattggagatgggttgatgtctccccttacaatggtaatccttggtggg
atcatcgatgattatgggagtggtgatctgactttctccaatgacgtggtggacaagtat
gcactcaagctgctcatcctagctattggcgttgcagtatcagctttcattgaaggaatt
tgctggacaagaactgcagaaagacaaacatcacgtctgaggatagaatacctaaaatcc
gtactcaggcaagaagtcagtttctttgacacacaagttggctcttccactaattttgaa
gtcatctcagccatttctggtgatgctcaattgattcaagatgtcatggctgacaagata
cccaactgtctggctcacctatcagcacttgtattcagcatcatagtgagtttcatactt
tcatggcgactagctgtggcttcccttccttttgcacttctgtttgtcgttcctgtgtta
ggctttggggcctcactacaaggtctggggatgaagatgaaggatgcttatgatacaggt
ggtggggttgcagagcatgcaatatcatcaatccgaactgtttattcttatgttggagaa
catcaaaccattaataaattcagccatgcacttcagacaagtatggcactaggcataaag
caaggatttacaaaaggtttgatgatcgggagtatgggtatggtttttgttgcttgggca
tttatatcttgggttggaagctatcttgttaccgaaaaaggagaaacaggtggtcgtgtt
ttcgtttcagcaatttgtgtaatcatggcagggctttcagctatgagtgcattgcccaac
gtcacattcatttcagaggcgatagctgctaccaaaagaatgtttaagatgatttcacgg
gttcctctcatagattctgataactggacagggaaaacgatagcatctgtgagaggagac
attgaattcaggggtgttgatttctcatacccatcaagaccagatacaccgatccttcaa
aaactcaacctcaaggtgaaagctggcaagacaataggtcttgtgggcagcagtggatca
gggaagtcgacaattatttctttgcttgaaagattttatgaccctgtgaaaggagatatc
cttcttgatggacaccgattaaagggctttcagcttaaatggttaagatctcaaatggga
ttagtgaatcaagagccagtgctctttgcaacatcaatcaaggaaaacatacttttcggc
aaagaaggggtttcggcagaaatggttgagattgcagctaaagcagcaaacgcacacgat
ttcatcatcaagttgcctgatgcttatgaaactcaagttggacagtttgggattcaatta
tccggtgggcaaaagcaaagaattgccatagcaagagctttgctaaaagaaccaagaatt
ttattgctggatgaagcaacaagtgcattagatacaaaatctgaaagagttgttcaggag
gccctagatcaggcttcaatagggagaacaactataatagttgcccatcgccttacaaca
attcgtaaggcagataagattgtggttctctggtcagggaaagtcattgaatctggtaca
catgacgagttaatgcataagaacaacaaaaaagaaggtggtgcctactaccaaatggtg
ttgttacagcaatcagcaacacataatgaatctggctcccctgattctctatatccacca
atccgacaacaacctcatggaagagatttcaatccccaatttgcccggagtccgattggt
gcaagatcaagcttgcaaaacagcccaatgtcccccttctgcccaacagtaattatgagt
atggctcattctgtccaaatgtattcttatcaagaaagtgatggcgaatacttaagtgac
atacctgatcgtagtccttcacaatggcgtctcttgcaaatgaatgctcccgagtggaaa
cgagcctttcttgggtgcctaggagccactggttttggggctatatcaccaatacatgcg
tattgtttgggatcagttgtctcagtatacttcttgcccgataaggccaaagtgaaatca
gatacagcgttttactgtataatttttgtagttttgggagtcgtttgctttgtcgccaac
ctacttcaacattataactttgcagttatgggagagcgtttaaccaagagggtgagagaa
aaaatgcttggaaacatcctcacgtttgaagttggatggtttgataaagatgagaacacg
agtgcagcaatttgtgcccggcttgcaactgaagctagcttgataaggtctctcgttgga
gatcgcatatcgttgctccttcaagtctttgtcagcgcatttcttgcttttattattgca
ttgataatcacttggagagtagccattgtcatgatttcagtgcaaccattgctcatagca
agcttctactccaagactgttctgatgaaaagcatgtccacaaaagccaaaaaggcacag
aacgaaggcactcaactagcaagtgaggcagtggtaaatcatagaacaatcactgccttt
gcttctcaacaaagaatcgtgagactatatgcagaaacgcagaaaggaccacggaaggaa
tgcattaaacagtcatggttctcgggtctgggcttgttcacttcccaatttgtgacaaca
gctgcaatatcgttggcatattggtatggtggaagagaaatgaataaaggattggtaacc
gcaaaacaaatgttccaggtcttcttcatcttgatgaccacaggcaagaacattgcagat
gcaggaagcatgagttctgatttatcaaagggtggaggtgcagttaagtcggtgttagca
gtactggacagaaaaacggagatcgacccagatgactctgaaggtttgaaagtaaggaga
atcaatggtcatatagagctgatgaatgtacacttttcctacccatcaaggcctgagcaa
atgatctttcagggcctgtctttaaaaattgaagctggaagaacagtagcacttgtgggt
caaagtggttcgggtaaatccaccatcattgggttaatagaaagattctacgacccaata
aaaggatgcatactcgttgatgcacgagacttgaaaaactacaatctgagacatttgaga
tcacatattgcactagtgagccaagaaccaacccttttcgctggaagtatccgtcataac
atcatctatggtaaagaggaagctagtgaagctgagatcatgaaagcagcaaagcttgca
aatgcccacgagtttataagttctatgaacgatggatacgaaacttactgtggagaaaga
ggggtgcagctatcaggaggccagaagcagagagttgcacttgctcgagcaatactcaag
aatccagcaatccttctgttagatgaggcaactagcgcactcgatagtgcatcggagaat
ctggtgcaagaagcattggagaagatgatggttggcaggacttgtgtagtagttgcacat
cgactatcaaccatacagaaatctgattccatagctgtgattgaaaatggaaaagttgcg
gagcaaggatcacactccgaactgctttcaatggggaatatgggttcctaccactctctc
ataaagctgcaacacatatga
DBGET
integrated database retrieval system
