Caretta caretta (Loggerhead turtle): 125624658
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Entry
125624658 CDS
T09292
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125624658 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccay03000
]
125624658 (ARID1A)
03021 Transcription machinery [BR:
ccay03021
]
125624658 (ARID1A)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125624658 (ARID1A)
Transcription factors [BR:
ccay03000
]
Eukaryotic type
Helix-turn-helix
ARID
125624658 (ARID1A)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125624658 (ARID1A)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125624658 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
125624658
NCBI-ProteinID:
XP_048681739
EnsemblRapid:
ENSCECG00000001592
LinkDB
All DBs
Position
19:10135670..10213955
Genome browser
AA seq
2264 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPAELKKAEAQQRDCPPEEAGGEAVAERGGEKQAESEAPPGKEL
QDGAESNGGDAGAEPDLKSSNGNAGPRPAAAAATLNNNLPEPPGGGGGSSDGVGAPQPPP
PQQPPPSHPAALAPPAYGFGPPYGRGAQAAAVAAAAAAAFHQHGGQQSTGMAALQSGGLE
QPYPGPAGAPPGPPPPQNSHGGAEHGFPNHQYNSYYTAAAAGRSAGAYPPPPQAYALSSP
RGSAQSPAQAAAGAKSPAAFQQQQQRFGAMGPSAAGGAAGGGGATPQPTATPTLNQLLTS
PSSARGYQGYPGGDYSSGPQDGGAAAKGPAADMASQYGGGNSQAWATAAGGGQQRSHHAP
MSPGSSSAGGGQPLARTQQPSSPMDQMGKMRPQPYGGSNPYTQQQAPQSGPQQGHGYPGQ
PYGPQTPQRYPMGMQGRTQSAMGSISYAQQIPPYGQQGPSAYGQQSQTPYYNQQSPHPQQ
QQPPYSQQPPSQTSHSQPSYQQPQTPSQPPQTPYPQPQSQPPHQQSPSPYPQQQPAAQQH
QQSQPPYSQAQSPYQQQQPPQQTASSALSQQSSSYPQSQPQPQQQPAYSQQRFPPPQELS
QDSFGSQASSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSG
ISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMP
PRPPSGHSDSIMHPSMNQSSIVQDRGYMQRNPQMPQYSSPQPGSALSPRQSSGGQMHAGM
GPYQQNSLGSYGPQGGQYGPQGGYPRQPNYNAMPNANYPSPGMGGSINPMGAGSQIHGQT
GVQPYTGLPPGRMSHAAIGNRPYGPNMANMPPQVGTGMCPPPGGMNRKAQEAAAAAMHAA
ANSIQNRPPGYPNMNQGGMMGTGAPYGQGINSMAGMINPQGAPYPMSGNMANNSAGMAAS
PEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKIWV
DRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGT
SSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGP
QTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFADGSDPTFQKRNSM
TPNPGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSGQGPNTGMGDPYNRAAG
PGMGNMALGQRQHYPYGGPYDRVRTEPGMGPEGSLGTGTPQANIMPSTPDSGMYSPSRYP
QQQQQQQRHDSYGNQFSTQGTSSGSPFPSQQTTIYQQQQQNYKRPMDGSYGPPAKRHEGE
MYNVSYSTGQGQAQQQLPTAQTQQPSQQQTAQPYTCPAVENQYGSTYPATDRRPAGGPQN
QFPFQFGRDRVSAPPGSTAQQNMPPQMMGGPIQSTPEGLQQGSLWQGRNEIGYSYPNRQS
SGSAAQGPAYHGVNRTDEILHADQRVNHEGPWPSHGNRQPPYGPSAPVPPMTRPPQPNYQ
TPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVPASHIASAAVQPP
MTRRDITFPPGSVEATQPVLKQRRRLTTKDIGTPEAWRVMMSLKSGLLAESTWALDTINI
LLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQKTLLDPERFCKS
SSPPPEEGDEEEEPQSPNYEEEEEEEEAAFASKEKAPLESNEEKLVSKFDKLPVKIVQKN
DPFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKMELLLTHKRVSCNSAFRK
RSTAESNPGTREGENLPSDGPPEKRITATMDDMLSARPGSLAEEEVKNSEATKESSKFPF
GNSPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNIIRSLSFVPGNDFEM
SKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTL
VTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQRLVLET
LSKLSIQDNNVDLILATPPFSRLEKVYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLA
ARAIAVQKGSIGNLLGFLEDSLATTQFQQSQASLMHMQNPPFESTSVDMMRRAARALLAL
AKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6795 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccagccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggcgaggcg
gtggcggagcgcggcggcgagaagcaggcggagagcgaggcccccccggggaaggagctg
caggacggggccgagagcaacggaggggacgccggggccgagcccgacctgaagagctcg
aacgggaacgcgggccccaggcccgccgctgccgccgccaccctgaacaataacctcccg
gagccgcccggcggcggcggcggcagcagcgacggggtgggggcgccgcagccgccgccg
ccgcagcagcctcccccttcccacccggccgccttggccccgccagcctacggcttcggg
ccgccctacggccggggagcccaggcggctgccgtcgctgccgccgccgcggctgccttc
caccaacatggcggacaacaaagcactggcatggcagcgctgcagagcgggggcctggag
cagccctacccggggccggcgggggcccccccggggccgccccctccccagaactcgcat
ggcggcgccgagcacggcttccccaaccaccagtacaactcctactacacggcggcggcg
gccgggcgcagcgccggcgcctacccgcctcccccccaggcctacgccctgagctccccc
cggggcagcgcgcagagccccgcgcaagcggccgccggggccaaatcccccgccgccttc
cagcagcagcagcagcgcttcggagccatggggccctcggccgccggcggggcagcagga
ggagggggcgccaccccgcagcccaccgcgacccccaccctcaaccagctgcttacctcc
cccagctcagcccgcggctaccagggctaccccgggggcgactacagcagcgggccccag
gacgggggagccgccgccaagggcccggccgcggacatggcctcccagtacggcgggggc
aatagccaggcctgggccacggccgcaggagggggccaacaaaggagccaccatgcgccc
atgagccccgggagcagcagcgctggcgggggacagccgctcgctaggacccagcagcca
tcaagcccaatggatcagatggggaaaatgagacctcagccatatggaggaagtaaccca
tacacacagcagcaggcgcctcagtcggggccacagcaaggacatggatatccaggacag
ccatatgggccacagactccccagagatatcccatgggaatgcaaggcaggacacagagt
gcaatgggcagcatctcgtatgcacagcagattcctccttatggacagcagggcccaagt
gcgtatggacagcagagccagactccatattacaaccagcaaagtcctcatccccagcaa
cagcagcctccatactctcagcagccaccgtcccagacctctcactcccagccttcttat
caacagccgcagactccgtctcagccgccgcagactccgtacccccagccgcagtcccag
ccgccgcatcagcagtccccgtccccgtatccccagcagcagcccgcggcccagcaacat
cagcagagtcagcctccatactcccaggcacagtcgccctaccagcagcagcaaccacct
cagcaaaccgcctcctctgctctttctcagcagtcgtcttcataccctcagtcacaacct
cagccgcagcagcagcctgcctactcccagcaacgcttcccgcctccacaggagttatct
caagactcatttgggtcccaggcatcctctgccccctcaatggcttccagtaaaggacaa
gaagatatgaacttgaatcttcaatcaaggccctccagcctgccggatctgtctggttcc
atagatgatctacccatgggtacagaaggagccctgagtcctggagtaagcacgtcaggg
atttcaagcagtcaaggagagcagagtaacccagctcagtctcctttctctccgcatacc
tcgcctcacctcccaggaatcagagggccctccccttcccccgttggctctcctgctagt
gttgcccagtcgcgttctggtccactctcacctgctgccgtaccaggcaatcagatgcca
ccccgaccacctagtggccattcggacagtatcatgcatccttccatgaatcagtcaagc
atagtccaagatcgaggttacatgcagaggaatcctcagatgccccagtacagctcccct
cagcctggctccgccttatctccacgtcagtcttctggaggacagatgcatgctgggatg
ggaccttatcagcagaattcactgggaagctatgggccgcaggggggtcagtatggtcct
caaggaggttatcccaggcagccaaactataatgctatgcctaatgccaactaccccagc
ccaggaatggggggaagtataaacccaatgggagcagggagccagattcatggtcagact
ggtgtgcaaccctatactgggcttcctccaggaaggatgagccatgcagccataggaaac
aggccctatggacccaacatggcaaatatgcctccccaggtggggacagggatgtgccca
ccaccgggtggcatgaaccggaaagcacaagaagcagctgctgccgccatgcatgctgct
gccaactccatccagaacaggcctcctggctatcccaacatgaaccaaggggggatgatg
ggaactggagctccttatggacaaggaattaacagtatggctggcatgataaacccccag
ggtgctccatatcctatgagtgggaatatggccaacaactcggcagggatggcagcaagt
cctgagatgatgggccttggggatgtcaaactaacgcctgcaactaaaatgaacaataag
gcagatgggacgccaaaaacagaatccaagtcaaagaagtccagttcctctactaccacc
aatgagaagattaccaaattgtatgagctgggtggtgagccggagaggaagatttgggta
gatcgttacctagcctttactgaagagaaggcaatgggcatgaccaacctcccagctgta
ggcagaaaacccctagacctttaccggctctatatctctgtaaaggagattggaggactt
actcaggtcaacaaaaacaagaaatggcgtgagttagccaccaatcttaatgtgggcact
tctagcagtgcagctagttctttgaagaagcagtacatccaatgtctctatgcctttgag
tgcaagattgaacgaggcgaagacccgcccccagacatctttgcggctgctgattcaaag
aagtcccagcccaagatacagcccccatctccagcgggttcaggctccatgcagggtcct
cagacacctcagtccaccagcagctctatggcagaaggaggagatttgaaaccaccaacg
ccagcgtctacaccacacagtcagatgccccctttgccaggcatcaggagtaactcagta
ggtcttcaggatgcctttgcagatggcagtgaccccactttccagaagcggaactccatg
actccaaatcccgggtaccagcccagcatgaatacctccgacatgatgggtcgcatgtcc
tacgagccaaataaggatccttatagcagtatgaggaaagctccaggaagtgaccccttc
atgtcctcagggcagggccccaacactggtatgggtgacccgtataatcgtgctgcaggt
ccagggatgggtaacatggccctgggacaacggcaacattatccctatggaggtccttac
gacagagtgaggacggaaccaggaatgggacccgagggaagcttaggaactggaactccc
caggccaacattatgccttccacccctgactcagggatgtactctcccagccgctatcca
cagcagcaacagcagcagcaacgacatgattcctatggcaatcagttctccactcaaggc
acatcctctggcagcccctttcccagtcagcaaaccaccatatatcaacagcaacagcag
aattacaagcgaccgatggatggcagttatggcccacctgccaagcgacacgaaggggag
atgtacaacgtatcgtacagcaccgggcaggggcaggcgcagcagcagctgcctacagca
cagacccaacaaccgagccagcagcaaactgcacagccttatacatgtcctgctgtggag
aaccagtatgggagtacataccctgccactgaccgccgacctgctggagggccgcagaac
cagttcccgttccaatttggcagagacagggtctcggctcccccgggctcgactgcccag
cagaatatgccaccacagatgatgggtggtcccatacagtctactccagagggcttgcag
cagggcagcttgtggcaagggcgcaatgaaatagggtacagctatccaaatcggcagagt
tcaggctctgcagcccaggggcctgcttatcatggagtgaatcgaacagatgaaattcta
catgcagatcagagggtaaatcatgaggggccatggccctcccatgggaaccgtcagcct
ccttatggtccttctgccccggtacccccaatgacaaggcccccacagcctaactaccag
acccctcctagcatgcagaatcacattcctcaggtatccagcccagcacctctgcccaga
cctctggagaaccgcacctcacccagcaaatctccgttcctgcactcggggatgaaaatg
cagaaagcaggacctcccgtccctgcctcgcatatagcctcagcagccgtacagcctccc
atgacacgacgggacatcaccttcccacccggatccgtggaagctacgcagcccgtgttg
aagcaaaggagacggctgaccacgaaagatattggaactcctgaagcatggagagtgatg
atgtctctgaagtctggtttgctggctgaaagtacgtgggccttggataccataaacatc
ctgctctatgatgacaacagcataatgaccttcaacctcagccagctgccagggttgctg
gagctactggtggaatatttccggcgttgcctgatcgaaatctttgggatcctaaaggaa
tatgaggtgggagatccaggacaaaaaacactattagatcctgaaagattctgcaagtct
tcgagtccccctcctgaagagggggacgaagaggaggagccacagagccctaactatgag
gaagaggaggaggaagaggaggctgcatttgcaagtaaagagaaagcacccctagagagc
aatgaggaaaaactagtcagtaaatttgacaagctgccagtcaagatagtgcagaagaac
gacccatttgtggtagattactcagacaagctggggcgagtacaggagtttgaaagtgga
ctgctgcactggcggattggtggtggagacaccactgaacacattcaaacccactttgag
agcaaaatggagctactgttaactcacaaacgagtttcctgcaactctgcctttagaaaa
cgttccacagctgagagcaatccaggaactagagagggggagaatctgccatctgatggt
cccccggagaaaaggataacggctactatggatgacatgctttcggcacggccaggttcg
ctggcggaggaggaggtcaaaaactcggaagcaacaaaggaaagcagcaaatttccattt
ggcaatagtccagctcagagccacagaaatatcaaaattctggaggacgaacctcacagt
aaagatgagacacccctgtgcacccttctagactggcaagactctctagctaaacgctgt
gtctgtgtgtctaacatcatcaggagtttatcgtttgtgccgggcaatgactttgaaatg
tctaagcaccccggtctgctgctgattctagggaaactgattctcctgcaccacaagcat
ccggaacgcaaacaggcaccactgacctatgagaaggaagaggagcaggaccaaggggtg
agctgcaacaaggtggagtggtggtgggactgcttggagatgctgcgtgaaaacacgctg
gttacactggccaacatttctggtcagttggacctctccccgtacccggaaagcatctgt
ttgcctgtcctggatggactcctccactgggcagtatgtccatcagcagaggcccaggat
ccttttccaaccctggggcctaatgctgtcctctcccctcagagactggttttggaaact
ctcagcaaactcagcatccaggacaacaacgtggatttgattcttgcaactccccccttt
agtcgcttggagaaggtctatagcaccatggtgcgtttccttagtgacagaaagaaccca
gtgtgtcgagagatggctgtggtactgctggccaacttggcacagggcgacagcctggca
gctagagcaattgcagtgcagaagggcagcattggcaacttgttgggcttcttggaggac
agcctggcaaccactcagttccagcagagtcaggccagcttgatgcacatgcaaaaccct
ccctttgagtcgacaagtgtggacatgatgcgtcgggcagctcgggcgctgcttgccctg
gccaaagtggacgagaaccactctgagttcacgttatacgagtcgcggctgttggacatc
tccgtgtcgcctttgatgaactcgttggtttcacaagttatttgtgatgtactgttttta
attggccagtcatga
DBGET
integrated database retrieval system
