Caretta caretta (Loggerhead turtle): 125627280
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Entry
125627280 CDS
T09292
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03013
Nucleocytoplasmic transport
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125627280 (UPF1)
03015 mRNA surveillance pathway
125627280 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125627280 (UPF1)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125627280 (UPF1)
5.6.2.5 RNA 5'-3' helicase
125627280 (UPF1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125627280 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
125627280 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125627280
NCBI-ProteinID:
XP_048687183
EnsemblRapid:
ENSCECG00000007423
LinkDB
All DBs
Position
25:2217294..2245538
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPAHGGPGQGPP
GPGQGPPGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEIC
LRYKGDLAPLWKGIGHVIKVPDSSSDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQMDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccgcacacgggggcccggggcagggcccgccg
ggcccggggcagggcccgcccggacagatcgaggcacaggttaatggtcctgatgggatc
ctccagaatggtgcagtggatgataatgtagctaaaaccagccaactgcttgcagaatta
aactttgaagaagatgaagaagatacctattacaccaaggatcttcctgtgcacgcttgc
agttactgtggtatccatgacccagcttgtgtggtttattgcaataccagcaagaagtgg
ttctgtaatgggcgtggaaatacatctggcagccacattgtaaatcatctcgtgagagca
aagtgtaaagaggtgactcttcacaaagatggccctttgggagagactgtcttggagtgt
tataattgtggatgtcgtaatgtgttcctccttggcttcattccggctaaggctgactca
gtagtcgtattactatgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaat
tgggacagctcacagtggcaacctcttatccaagaccgctgtttcctttcctggctggta
aagattccttctgaacaggagcagttgagagcacgtcagattacagctcaacaaattaac
aaactggaagaactctggaaggaaaatccatctgcaacccttgaagacttggaaaaacct
ggtgttgatgaagaaccgcagcatgtcttacttagatatgaggatgcttatcagtaccaa
aatatttttggacctctagtcaagcttgaagcagattacgacaagaaactcaaggagtcc
cagacccaagataatatcactgtgagatgggacctgggcttgaacaagaagagaattgct
tacttcactttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgc
ctgagatataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagtt
cctgatagctcttcagattatggtgatgagatagctattgagctgaggagcagtgttgga
gcacctgtggaggttactcataacttccaagtggattttgtgtggaagtccacttcattt
gacagaatgcagagtgctttaaaaacatttgctgtggatgaaacttcagtttctggctac
atctaccacaaactgttaggtcatgaggtagaagatgtgattattaaatgccagctgcca
aagcgttttacagcacaaggacttcctgacctcaaccattctcaggtttatgctgtaaag
actgtcttgcagcgtcctctgagccttatccaaggtccccctggtacaggaaaaactgtg
acatcagccactattgtctaccatttagctaggcagggcaatgggcctgtgttagtttgt
gccccaagtaacatagctgtggatcagctcactgagaagatccatcagacaggactaaaa
gtcgttcgtctatgtgctaaaagccgcgaggcaattgattctcctgtatctttcctggca
ttgcacaaccagatcagaaacatggatagtatgcctgagctccagaaattgcagcagctg
aaagatgaaactggagaattgtcatctgctgatgagaaacgctatcgtgcactgaaacga
acagcagagcgtgaattacttatgaatgcagatgttatttgctgcacatgcgtgggagca
ggtgacccaagacttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacag
gctactgaaccagaatgtatggtgccagttgttctgggagccaaacagctgatccttgta
ggtgatcactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggcaggcctg
tctcagtccctttttgagaggcttgtggtgctgggtatccgtccaattcgcctgcaagtg
cagtatcgtatgcaccctgcacttagtgcttttccatccaacatcttttatgaggggtca
ctccagaacggtgttactgcagcggaccgtgtgaaaaagggatttgatttccaatggccc
cagccagataagccaatgtttttctatgtgacacagggtcaagaagaaattgccagttca
ggcacctcttacttaaacaggacggaagctgctaatgtggagaagataactacaaagtta
ttgaaagcgggtgccaaacctgatcagattggcattattactccctatgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggttccttgcatacaaaactctatcaggaa
gtggaaatcgcaagtgttgatgctttccaaggtcgagagaaggactttattatcctttct
tgtgtaagagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaat
gtggctctcaccagagcaagatatggagtaattattgttgggaacccaaaagctctgtct
aaacagccactttggaatcacctgctgaactactacaaggagcagaaggtactggtagag
ggaccactaaacaatctccgagaaagccttatgcagttcagcaagccccgtaaacttgtc
aataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgtgaagct
attatcccaggatctgtctatgaccggagcagtcaaggccgcccatcgaacatgtacttc
caaacacatgatcagattggaatgattagtgctggacccagccatgtcactgctatgaac
attcctatccctttcaaccttgtgatgccaccaatgccaccaccaggatattttgggcag
gctaatggaccggcagcaggacgtgggacacctaaaggaaagactggtcgtggtgggcgc
cagaaaaatcgttttgggattcctggaactagccagtcaaaccttccaaacagtcaagcg
agccaagatgtggtgtcccagccattctcccagggtccactgactcagggttatatctcc
atgagtcagccatcacagatgagccagccaggactctcccagccagaattatcacaggac
agttaccttggggatgagtttaaatcgcagatggatgtggcgctgtcgcaggactctact
taccagggtgaacgtgcatatcaacatggtggagtgacaggactgtcacagtattag
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integrated database retrieval system
