Caretta caretta (Loggerhead turtle): 125627371
Help
Entry
125627371 CDS
T09292
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125627371 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125627371 (COL5A3)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125627371 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125627371
NCBI-ProteinID:
XP_048687340
EnsemblRapid:
ENSCECG00000003925
LinkDB
All DBs
Position
26:12565241..12619412
Genome browser
AA seq
1796 aa
AA seq
DB search
MAKSRPGARGPSRVTLLLLLALLRGPPRARAGNAEPVDVLRALGVRVGRDGISIAAGICP
QRRGAEESDFAFRLENSTQLSAPTRQLFPDGPFPEDFSILATLRARRGSQAFLLSLYDER
GVQQLGVEIGRSPVFLYEDQTGQPAPEQYPLFSRVSLADGKWHRVALRVEGASVALLVDC
EAPVTLPLERGPRPVVSTAGVTLLGARLLDKEVFQGDIQQLLISPDPRAALHYCETYMPG
CDMPLPYALQGLDPEESGPEPPAAPARSKGRKGKGKGKRRGKGKKKRNKELAEQRDTAPT
VGPGQEALTQAAPTLEATPSGAEHVTPLPGTTPASTVTISPNLPEAYEDLGEEHGIGADG
DPGANSTEPPDYALREYEEYDDGEPLGHDASLERYGPAERREALGQAAREASRKGEKGEP
ATIEPGRRFEGLPGAPGPAGEMGPPGPVGPAGLPGDPGEQGPAGRPGLPGADGGRGPPGT
MIMLPFQFGSDSPKGPTVSFQEVQAQAVLQQAKLSMKGPPGPMGLTGRPGPLGLPGNPGL
KGDSGDMGPQGPRGMQGPPGPPGKGGKRGRSGADGARGLPGDTGPKGDRGFDGLPGLPGE
KGHKGDVGKPGPAGPPGENGAKGSGGPAGPRGQPGEPGVRGLVGSRGLPGPPGQPGVSGM
DGVPGPKGNVGIQGEPGPPGQQGTPGPQGLPGPQGPIGMPGEKGPLGKRGMQGVAGADGP
PGHPGREGPAGEKGLQGPAGTVGPVGYPGTRGVKGAFGARGLKGSKGEKGEDGFPGFKGD
MGHKGDRGNAGLLGPRGEDGPEGLKGQLGPVGEAGASGPAGEKGKLGVPGLPGYPGRQGP
KGSAGFLGPLGLAGEKGKRGKAGQAGQAGQRGPPGLPGERGQTGPTGKPGPKGDASHDGA
PGAVGEKGPQGPQGPNGFRGPKGPPGPAGKDGLPGHPGQRGEPGYHGKTGPPGPTGVVGP
QGNSGETGPIGERGHPGSPGPPGEQGLPGAAGREGAKGDPGPAGLPGKNGPPGIPGFPGA
RAAPGETGPAGLKGREGPPGPPGPTGSPGERGPSGAAGGIGLPGHGGEQGPPGPAGEKGA
PGERGPMGPAGHDGIQGPGGLPGPAGPPGPAGEDGDKGELGGSGQKGSKGDKGEAGPPGP
TGIQGPIGHPGSAGVDGEPGRRGQQGMFGQKGDEGARGFPGLSGPVGLQGMPGPQGEKGE
SGDVGPMGLPGAAGPRGAQGPAGGDGPQGMPGGTGQPGAVGDKGEPGEAGDPGAPGEPGR
PGINGELGEKGDSGPSGAAGAPGKRGPPGEDGAKGNLGPIGFPGDPGPAGDPGVPGLDGA
PGEKGDGGDPGMPGPAGASGEPGPPGAPGKRGAVGPAGREGRPGEKGAKGEPGTEGPPGK
MGPVGVQGPPGRPGSEGLRGIPGPAGEQGLLGAPGQAGPPGPMGPTGLPGLKGDPGYKGD
KGHAGLIGLIGPPGEMGEKGDQGLPGNQGAPGPKGDPGLAGPIGPPGPPGSPGLVGPLGQ
KGSKGSPGALGPRGDTGPPGPPGPPGRPAELLEPLPMERVRKRRREAEGEQGDQAWPPDY
APEGLEEVYASLSSLRTEVEQLRRPRGTPESPARVCKELQLCHPHFPDGEYWIDPNQGCT
RDAFKVFCNFTAGGETCLFPDKRFESVRLAAWSKEKPGSWFSTFRRGRTFSYVDAEGNPL
GVTQLTFLRLLSARARQTFTLSCQDAAAWYHAGAASYARALRLRGADGQEMGHNRTASPV
LALHDGCQLRRGQARTVLEVRSSRLEQLPLADVAVLDFGGANQKFGFELGPVCFMG
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaagccgtccgggtgcacggggtccctccagggtcacgctcctgctcctgctg
gccctgctgcgcggcccgccccgggcgcgggcaggtaacgccgagccggtggatgtgttg
cgggcactgggggtgcgggtcggcagggacggcatctccatcgcggccgggatctgcccc
cagcggcgcggggccgaggagagcgacttcgccttccgcctggagaacagcacccagctc
agcgcccccacccgccagctcttcccagatggccccttccctgaggatttctccatcctg
gcgacgctgcgggcccggcggggcagccaggccttcctgctgtcgctgtacgacgagcgc
ggggtgcagcagctgggtgtggagatcggccgctcgcccgtcttcctgtacgaggaccag
accgggcagccggcgcccgagcaatacccactcttcagcagggtcagcctggccgatggc
aagtggcaccgcgtggcactgcgcgtggagggggccagcgtggccctgctcgtggactgc
gaggcgcccgtgacgctgcccctggagcgtggcccgcggcccgtcgtcagcaccgctggc
gtcaccctgctgggggcccggctgctggacaaggaggttttccagggcgacatccagcag
ctgctaatctccccggacccacgggcagccctgcactactgcgagacctacatgcccggg
tgcgacatgccgctgccctacgccctgcagggcctggaccccgaggagagcgggccggag
cccccggctgcccccgcccggagcaagggcaggaagggcaaagggaagggcaaacgcagg
ggcaagggcaagaagaagaggaacaaggagctggcagagcagcgggacaccgcgcccacc
gtggggccgggccaggaggccctgacccaagcagctcctaccctggaggcgaccccatct
ggggcggagcacgtcaccccactgcccgggaccacccctgccagcaccgtgaccatcagc
ccgaacctgcctgaggcctatgaggatctgggagaggagcacgggatcggggcggatggg
gaccccggggccaacagcaccgagccccctgactacgccctgagggagtatgaggagtac
gacgacggggagcccctgggccacgacgccagcctggagcgctacggccctgccgagcga
cgggaagccctgggccaggctgcccgggaagccagccggaagggggagaagggggagcca
gccaccatcgagcccggccggcgattcgaagggctgccgggagccccgggcccagcgggc
gagatgggccccccagggccggtggggccggcggggctgccgggcgaccccggtgagcag
ggccctgcggggcggccggggctgccgggagccgacgggggccgggggcctccggggacc
atgatcatgctgccgttccagttcggcagcgactcgcccaagggccccaccgtgtccttc
caggaggtacaggcacaggctgtcctgcagcaggccaagctctccatgaagggacccccg
ggccccatgggcttgaccggccggccgggccccctgggtctccctgggaatcccggcctg
aaaggggactcgggagacatggggcctcagggtccgcgagggatgcagggcccacccggc
ccgccggggaaagggggcaaacggggtcgctctggggcggacggtgcccggggcctccca
ggggacaccggacccaagggcgacaggggcttcgatgggctcccggggctgccgggcgag
aagggtcacaagggggacgtggggaagccagggccagcgggccccccaggagagaacgga
gccaagggctcgggcggcccggcaggacccagggggcagcccggggagcccggcgtgcgc
ggcttggtcggctcccgtggcctccctggccccccaggacagccgggcgtgagcggcatg
gacggcgtgcctgggcccaagggcaacgtggggatccagggggagccgggcccccccggg
cagcagggaaccccgggaccccagggcctgcctggcccccaggggcccatcgggatgccg
ggggagaagggcccgctggggaagcggggcatgcagggcgtggccggcgctgacgggccc
cccggtcaccctggcagagaggggccggcgggggagaaagggctccagggtccagccggc
accgtgggacccgttggctacccaggcacccgcggggtcaagggggccttcggagccagg
ggcctgaagggaagcaaaggggagaagggagaagacggattccccggcttcaagggtgac
atgggccacaagggtgacaggggcaacgcggggctgctggggccgcggggggaggacggc
cccgaggggctgaagggccagctgggccccgtgggggaggcaggcgcctccggcccggcg
ggggagaagggcaagctgggcgtgccaggcctgccgggctaccctgggcgccagggcccc
aagggctctgccggcttcctgggccccctggggctcgcaggggagaaaggaaagcggggc
aaggctggccaggccgggcaggcaggacagcgtggacctccgggcctgccaggggagcga
ggccagacggggccgacggggaagccgggaccgaagggcgacgccagccatgacggggcc
cccggagccgtgggggagaagggcccccaggggccgcagggccccaacggtttccgaggc
ccgaagggtccacctggcccagccgggaaggacgggttgcccggacacccaggacagcgc
ggggagccgggataccatggcaagaccggcccccctggccccacgggagtggtgggaccc
cagggtaactcgggcgagacgggccccattggagagcgggggcatccgggctcccctggc
ccccctggggagcaggggctaccaggggctgccggccgggaaggggctaagggcgaccct
ggcccggccggcctgcctgggaagaacggccccccgggaatccctggctttcccggcgcc
agggccgcgcccggagagacggggccggccggcctgaagggcagggaagggcctcccggg
cccccgggccccacaggctcccccggtgagcgaggcccctcgggggcagctggaggcatc
gggctgccaggccatgggggggagcagggcccccccggccccgctggggagaagggtgcc
ccgggcgagaggggcccaatgggccctgccgggcatgatgggatccaggggcccgggggc
ctgccaggcccagccggacccccgggccctgcgggcgaggatggcgacaagggcgagctg
gggggctccggacagaaagggagcaagggggacaagggcgaggcgggcccaccgggacca
actggtatccagggacccatcgggcaccccggctccgcgggagtggatggggagcccggc
cgccgtgggcagcaggggatgtttggccagaagggagatgagggggctcggggattccct
ggcttgagcggccctgtcggattgcagggcatgccgggcccgcagggtgagaagggcgag
agcggagatgtcggccccatgggcctccccggcgctgcggggccacgtggggcgcaggga
cctgccggcggcgatggcccccaggggatgccaggtggaacgggtcagccgggcgccgtc
ggggacaagggggagccgggtgaggcgggagaccccggggccccaggggagccaggccgg
ccgggcatcaatggggaactgggggagaagggagattctggtccgtcgggcgccgctggg
gccccgggcaagagggggcccccaggagaggatggagccaaaggcaacctgggccccatc
ggcttccctggcgacccaggccccgctggagaccccggggtgccgggcctggacggcgcc
cctggggagaagggtgacggcggggaccccggcatgccgggcccagcgggcgcttctggg
gaaccaggtcctcccggtgccccagggaagaggggcgcagtggggccagccgggcgtgag
ggtcggccgggcgagaagggcgccaagggcgagcctggcaccgaggggcctcccgggaag
atgggccccgtgggggtgcagggaccccctggccggcctggctccgaaggtctgcgcggg
atccctggtccagctggggagcagggcctgctgggggccccggggcaggcagggccaccg
ggccccatgggccccacagggttgcctggcctcaagggagaccccggctacaagggtgac
aagggtcacgcagggctcatcgggctcatcggccccccgggggagatgggggagaagggc
gaccaggggctgcctggcaaccagggggccccagggcccaaaggagaccccggcttggct
ggccccattggccccccgggccctcctggatcccctgggctcgtggggccgctgggtcag
aagggctccaaggggtcgccgggagccctgggccccagaggagacacaggaccccctgga
cccccagggccaccgggccgcccggcggagctgctggagcccctgcccatggagcgagtc
cggaagcggcgccgggaggcggagggggagcagggggaccaggcgtggcccccggactac
gcgcccgaggggctggaggaggtgtacgcctcactcagctccctgcgcactgaggtcgag
cagttgagacgcccccggggcacccccgagagcccagcccgcgtctgcaaggagctgcag
ctctgtcacccccacttccccgacggcgagtactggatcgaccccaaccagggctgcact
cgagacgccttcaaggttttctgcaacttcacggcaggcggggagacctgcctgttccca
gacaagagattcgagagtgtccgactggctgcctggagcaaggagaagccggggagctgg
ttcagcaccttccggaggggcaggacgttctcctacgtggacgcggaggggaacccgctg
ggcgtgacccaactgaccttcctgcggctgctgagcgcccgcgcccgccagaccttcacg
ctgagctgccaggacgcggccgcctggtaccacgccggggccgccagctacgcccgggcc
ctgcgcctccggggcgccgacgggcaggagatggggcacaaccgcaccgccagccccgtc
ctcgccctgcacgacggctgccagctgcgccggggccaggcgcgcacggtgctggaggtg
agatcgtcccgcctggagcagctgcccctggccgacgtggctgtcctggacttcggaggc
gccaaccagaaattcggcttcgagctgggccccgtctgcttcatgggctga
DBGET
integrated database retrieval system
