Caretta caretta (Loggerhead turtle): 125638744
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Entry
125638744 CDS
T09292
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125638744 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125638744 (LIG4)
Enzymes [BR:
ccay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125638744 (LIG4)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125638744 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID:
125638744
NCBI-ProteinID:
XP_048710784
EnsemblRapid:
ENSCECG00000017366
LinkDB
All DBs
Position
1:complement(105635679..105644406)
Genome browser
AA seq
913 aa
AA seq
DB search
MSSTPTSQSSPKRTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGRLTIQQVNELLDSVASNNDTKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHSDATELYNVTTDLEKVCRQLHDPSVSL
SDVSTMLFSAFKPMLAAIANVQQIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSLYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHKRDPP
CNILCGTEKPEVYIEPCNSIIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDVGDDEPQEKKRKTVPKVKKIIGIMDHFKAPDLSNVNKIS
NIFEDLEFCVMTGTENHSKSELESKIAESGGNVVQNPGPDTYCVIAGIENVRVKNTISSN
KHDVVRAEWLLQCFEAKIFVPWQPAVMIHMSPDTKQHFACEYDCYGDSYTADTEVTQLKE
VFSRINNKNDEKIPLDMIADLEERYLWNSSPLSMFRQNTIYLDLYAVVNDPSTKTHGTML
SIRALELRFHGAEIVSQLKEGVSHVIMGEDHTHVKEIKTLRRTFEKKFKILSERWVTESI
KEGKLQNENPYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccacacctacttcacaatcttcccctaaacgaacggtggcatcagtagttcct
tttgcagatctgtgttcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtcacagactctttttatccagcaatgcgacttattcttccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgaatgagctgctggattcagtt
gctagtaataatgataccaaaaggaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcacttgaacaaaagtggctgatccggatgattataaaggatctaaaa
cttggtgttagtcagcaaaccatattttcccttttccattctgatgctactgagttatac
aatgtcacaactgacctggagaaagtttgcagacagctgcatgacccttctgtatcactc
agtgatgtttccaccatgttgttttcagcctttaaacctatgcttgctgctattgctaat
gtccagcaaattgagaaacaaatgaatcaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctcccgtaatggg
tttgattatactcagcagtttggtgcttctcccctcgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgcttttgtgtgtttgatgtattaatggttaatgatcag
aagttaggtcacgagatactaagcaaaagatatgagattctaaatgagctgtttacacca
ataacaggcagaatacacatagtgcataaaacacaggctagcaccaggaaagaagtagtt
gatgctctgaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccctttacaagccagacaaacgtggggaaggctggttaaaaatcaaaccagagtatgtc
aatgggctcatggatgagctagacctattaattattggtggttactggggaaaaggtttg
cgtggtggcatgatgtctcattttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtctttcattctatttgtcgtgttggttctggttacactatgaaggagcta
tacgatcttggtttgaaattggccaaacactggaagccttaccataaaagagatcctcct
tgtaatattttatgtggaactgagaagcctgaagtttacatcgagccttgtaactcaatc
atagttcagattaaggcagcggagattgttagtagtgatatgtacaaaactgattgcact
ttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcagaggtaaagcatcagggaagctagcatctaagcacctt
gatgtgggtgatgatgaaccacaagaaaagaaacggaaaactgtaccaaaggtaaagaaa
ataattggaataatggatcattttaaagcccctgatctttccaatgtaaataagatttct
aatatatttgaagaccttgagttttgtgttatgactggaacagaaaaccattcaaaatct
gaactggaaagtaaaatagcagaaagtggtggtaatgtggtacaaaaccctggaccagac
acttactgtgttattgcaggaattgagaatgtcagagtaaaaaatactatatcttccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaagcgaaaatatttgta
ccatggcagccggccgtcatgattcacatgtctccagacacaaaacaacattttgcatgt
gagtatgattgttatggtgacagctacacagcagatacagaggtgacccaactaaaggaa
gtattctcaagaattaataataaaaatgatgagaagatacctctggacatgattgctgac
ttagaagaacgttatctgtggaatagctctccactcagtatgttcaggcaaaataccatt
tatctggacctttatgctgtagttaatgaccccagtaccaagacccatggaacaatgcta
tcaattagggcgttggagctccgttttcatggagcagaaatagtctctcagctaaaggag
ggtgtgtcccatgtaattatgggagaagatcatacccatgtaaaagagataaaaacactt
aggagaacatttgagaaaaaatttaaaatcctatctgagcggtgggtaacagagtcaata
aaggaggggaagttacagaatgaaaatccatacctaatttaa
DBGET
integrated database retrieval system