KEGG   Caretta caretta (Loggerhead turtle): 125638744
Entry
125638744         CDS       T09292                                 
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    125638744 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccay03400]
    125638744 (LIG4)
Enzymes [BR:ccay01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125638744 (LIG4)
DNA repair and recombination proteins [BR:ccay03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     125638744 (LIG4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_IV BRCT_2 DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme RTT107_BRCT_5 Ribosomal_S5_C
Other DBs
NCBI-GeneID: 125638744
NCBI-ProteinID: XP_048710784
EnsemblRapid: ENSCECG00000017366
LinkDB
Position
1:complement(105635679..105644406)
AA seq 913 aa
MSSTPTSQSSPKRTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGRLTIQQVNELLDSVASNNDTKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHSDATELYNVTTDLEKVCRQLHDPSVSL
SDVSTMLFSAFKPMLAAIANVQQIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSLYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHKRDPP
CNILCGTEKPEVYIEPCNSIIVQIKAAEIVSSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDVGDDEPQEKKRKTVPKVKKIIGIMDHFKAPDLSNVNKIS
NIFEDLEFCVMTGTENHSKSELESKIAESGGNVVQNPGPDTYCVIAGIENVRVKNTISSN
KHDVVRAEWLLQCFEAKIFVPWQPAVMIHMSPDTKQHFACEYDCYGDSYTADTEVTQLKE
VFSRINNKNDEKIPLDMIADLEERYLWNSSPLSMFRQNTIYLDLYAVVNDPSTKTHGTML
SIRALELRFHGAEIVSQLKEGVSHVIMGEDHTHVKEIKTLRRTFEKKFKILSERWVTESI
KEGKLQNENPYLI
NT seq 2742 nt   +upstreamnt  +downstreamnt
atgtcttccacacctacttcacaatcttcccctaaacgaacggtggcatcagtagttcct
tttgcagatctgtgttcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtcacagactctttttatccagcaatgcgacttattcttccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgaatgagctgctggattcagtt
gctagtaataatgataccaaaaggaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcacttgaacaaaagtggctgatccggatgattataaaggatctaaaa
cttggtgttagtcagcaaaccatattttcccttttccattctgatgctactgagttatac
aatgtcacaactgacctggagaaagtttgcagacagctgcatgacccttctgtatcactc
agtgatgtttccaccatgttgttttcagcctttaaacctatgcttgctgctattgctaat
gtccagcaaattgagaaacaaatgaatcaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctcccgtaatggg
tttgattatactcagcagtttggtgcttctcccctcgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgcttttgtgtgtttgatgtattaatggttaatgatcag
aagttaggtcacgagatactaagcaaaagatatgagattctaaatgagctgtttacacca
ataacaggcagaatacacatagtgcataaaacacaggctagcaccaggaaagaagtagtt
gatgctctgaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccctttacaagccagacaaacgtggggaaggctggttaaaaatcaaaccagagtatgtc
aatgggctcatggatgagctagacctattaattattggtggttactggggaaaaggtttg
cgtggtggcatgatgtctcattttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtctttcattctatttgtcgtgttggttctggttacactatgaaggagcta
tacgatcttggtttgaaattggccaaacactggaagccttaccataaaagagatcctcct
tgtaatattttatgtggaactgagaagcctgaagtttacatcgagccttgtaactcaatc
atagttcagattaaggcagcggagattgttagtagtgatatgtacaaaactgattgcact
ttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcagaggtaaagcatcagggaagctagcatctaagcacctt
gatgtgggtgatgatgaaccacaagaaaagaaacggaaaactgtaccaaaggtaaagaaa
ataattggaataatggatcattttaaagcccctgatctttccaatgtaaataagatttct
aatatatttgaagaccttgagttttgtgttatgactggaacagaaaaccattcaaaatct
gaactggaaagtaaaatagcagaaagtggtggtaatgtggtacaaaaccctggaccagac
acttactgtgttattgcaggaattgagaatgtcagagtaaaaaatactatatcttccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaagcgaaaatatttgta
ccatggcagccggccgtcatgattcacatgtctccagacacaaaacaacattttgcatgt
gagtatgattgttatggtgacagctacacagcagatacagaggtgacccaactaaaggaa
gtattctcaagaattaataataaaaatgatgagaagatacctctggacatgattgctgac
ttagaagaacgttatctgtggaatagctctccactcagtatgttcaggcaaaataccatt
tatctggacctttatgctgtagttaatgaccccagtaccaagacccatggaacaatgcta
tcaattagggcgttggagctccgttttcatggagcagaaatagtctctcagctaaaggag
ggtgtgtcccatgtaattatgggagaagatcatacccatgtaaaagagataaaaacactt
aggagaacatttgagaaaaaatttaaaatcctatctgagcggtgggtaacagagtcaata
aaggaggggaagttacagaatgaaaatccatacctaatttaa

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