Caretta caretta (Loggerhead turtle): 125642188
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Entry
125642188 CDS
T09292
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03013
Nucleocytoplasmic transport
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125642188 (UPF3B)
03015 mRNA surveillance pathway
125642188 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125642188 (UPF3B)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125642188 (UPF3B)
mRNA cycle factors
P-body specific factors
125642188 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125642188
NCBI-ProteinID:
XP_048719059
EnsemblRapid:
ENSCECG00000009310
LinkDB
All DBs
Position
9:78575730..78586467
Genome browser
AA seq
465 aa
AA seq
DB search
MKEDKENTRPKEKRAPGAPLDLRGGGEPERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQ
PLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVE
FAPFQKSAKKKNKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKEL
IAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKK
VDKCPEKERDKSKDEPKIKLLKKPEKDERDLEKKEKFKKLEKENVREEKAAGTLSSVSAK
RSDGETKEEKGKKSEDEYGKDYRDRERDFEREREYERLQREKQRRQDEERRRQKERFEKE
KVFRRKEEEVKKEINSLREKGRKSDLPDFTGNTEKAEKITKDDKKEDAAKRDRIRNKDRP
AMQLYQPGVRSRSRLCPYEDIATKSADQGADKKQESETSNTKEEE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggagaacactaggcctaaggagaagcgggcgcccggggcccccctg
gatctccgggggggcggggagcccgagcggcccaaggacaagaaggagacgctcagcaag
gtggtaattcgacgcttgcctcccagtttgaccaaggaacaacttgaagaacatcttcag
cctttgcctgaacatgactattttgaattctttgctaacgattccagtttgtatcctcac
atgttttccagagcatacatcaactttaaaaaccaagaagacatagtactgttcagggat
cgttttgatggttatgtttttgttgatcacaaaggtcaggagtatgctgccatagttgaa
tttgcacctttccaaaaatctgcaaaaaagaagaataagaaaaaggatgccaaaactggg
actattgatgatgacccagagtataagaagtttttggaaagttacagtgcagatgatgaa
aagttaacatcaactcctgaaactctactagaggaaatagaggcaagaaacaaagagtta
atagctaaaaagacaactccccttctgaacttcttgaaaaacaaacagagactgagagaa
gaaaaaagagaggagaggagaagaagggaactggaaagaaaaagacaaagagaagaagaa
aggaggaaatggaaagaagaagaaagaaggaagagaaaagaagcagaaaaactgaagaaa
gttgacaaatgcccagagaaagaaagggataaatcaaaggatgaaccaaagattaaacta
cttaagaaaccagagaaagatgaaagagacttggagaaaaaggaaaagttcaagaaactg
gaaaaagaaaacgtgagggaggaaaaagctgctggcacgctaagcagtgtgtcagccaaa
cgatccgatggagagactaaagaagagaagggaaaaaaatctgaagatgaatatggaaaa
gattacagggaccgggagagagactttgaaagagagagagaatatgagagactgcagcgg
gagaaacagagacgccaagacgaagagcgtcgtaggcagaaggaacgctttgagaaagaa
aaagtttttagaagaaaagaggaagaggtgaaaaaggagataaactcactcagagagaaa
ggaaggaaaagtgatcttccagactttacaggcaacacagaaaaagctgagaaaataacc
aaagatgacaaaaaagaggatgcagctaagagagatcgcatcagaaacaaggatcgtcca
gcaatgcagctataccagccaggagttcgaagtcgaagtagactgtgtccttatgaagac
attgctacaaagtctgcagaccaaggagcagataaaaaacaggaaagtgagaccagtaat
acaaaagaagaggagtga
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