Caretta caretta (Loggerhead turtle): 125642623
Help
Entry
125642623 CDS
T09292
Symbol
CSTF2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125642623 (CSTF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125642623 (CSTF2)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125642623 (CSTF2)
U7-dependent histone pre-mRNA processing factors
125642623 (CSTF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125642623
NCBI-ProteinID:
XP_048720219
EnsemblRapid:
ENSCECG00000018215
LinkDB
All DBs
Position
9:93076308..93093376
Genome browser
AA seq
611 aa
AA seq
DB search
MAGLAVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPIN
PEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
IVDPEIALKILHRQTSVPPLIPGNPQPVPGPGPGPGPGPGPGPNAQMNQQNPPSSQPQPI
GGMHVNGAPPLMQPPMQGGVPAPGQMPASVAGPGPGPLAPGGGMQPQVGMPGGGPVPLER
GQGNLQLSPVGPARPASIERVQVPMPDPRAPMQRGPLPASGPPPRGLLGDAPNDPRGGTL
LSVTGEVEPRGYLGPPHQGPPMHHMPGHDNRGPPPHEMRGGPMGEPRPLMGEPRGPLMDA
RGGRDPRGMEPRGMEPRGMEPRGMEPRGMEPRGMEPRGMEPRGMEPRGMEPRGMEPRGME
PRGMEPRGPGPNPRGPMPGGIQGPGPLNLGASGPQGPRQVPNMPGAGIQGGGMPGAGIQA
GGMPGAVVQGAGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL
KEQIQKSTGAP
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggcggtgcgggaccccgcggtggatcgctcgctgcgctccgtgttcgtg
gggaatattccatacgaagccacagaggagcagctaaaggacattttctcagaggtcgga
cctgtcgtcagtttcaggttggtgtatgacagggagacaggcaaaccaaagggatatggc
ttttgtgaataccaagaccaggagacagcgctcagcgccatgcggaacctgaatgggcgt
gagttcagcgggagagcgttgcgtgtggacaacgcagccagtgagaagaataaggaggag
ctgaagagcctgggcacaggtgcccctatcatagagtcaccatatggagaccctataaat
cctgaagacgcccctgagtctatcagcagggcagttgccagcctgccacctgagcagatg
tttgagctgatgaagcagatgaagttgtgtgtgcagaacagccctcaggaggcacggaac
atgctgctccagaaccctcaactggcatatgccctgctgcaggcccaagtggtgatgagg
atcgtcgatccagagattgctctgaaaattctgcatcgtcagaccagtgttccacctctg
attccaggcaacccacagccagttcctgggcctggacccgggcccgggcccgggcctggt
ccaggtcctaatgcacagatgaaccagcagaatcccccatcgtcccagccacagcccata
ggtggcatgcatgtaaatggagctcctcctctgatgcagcctcctatgcagggtggagtg
ccagccccaggacagatgccagcctccgtagccggcccaggccccggccccttggctcct
ggaggtggaatgcagcctcaggtcgggatgccgggaggtggaccagtgcccttggaacgt
ggacaaggaaacctgcagctctcgcccgtgggacctgccaggcctgcatctatcgagcga
gttcaagtgcccatgccagacccgagggcccctatgcagcgtggaccattacctgctagc
ggcccacctccccggggccttctgggagatgctccaaatgacccacgtggagggaccctg
ctctcagtcactggagaagtggagcccagaggttaccttgggccaccccaccaaggtcca
cccatgcaccatatgcccggccatgacaatcgtggtccacccccacatgaaatgagggga
ggaccaatgggagaacccaggccactgatgggagaacctagagggcctttgatggatgct
cgaggtggaagagatcccaggggcatggagccgagagggatggagccgaggggcatggag
ccgagagggatggagccgaggggcatggagccgaggggcatggagccgaggggcatggag
ccgagaggcatggagcccaggggcatggagccgagaggcatggagcccaggggcatggag
ccgagaggcatggagcccaggggccctggccccaacccaaggggcccaatgcctggtgga
attcaaggacctgggccacttaacttgggagcaagtggccctcagggacctagacaggtt
cccaacatgccaggggcaggcatacaaggaggtggcatgccaggggcaggcatacaagca
ggaggcatgccaggggcggtggtacaaggagctggccagccaggtggctttagccctggg
cagaaccaggtcaccccccaagatcacgagaaggctgccctgatcatgcaggttctccag
ctaactgcagaccagatcgccatgctgcctccagagcaaaggcaaagcatccttatccta
aaggagcagatccagaaatccactggggctccataa
DBGET
integrated database retrieval system
