Caretta caretta (Loggerhead turtle): 125645189
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Entry
125645189 CDS
T09292
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04622
RIG-I-like receptor signaling pathway
ccay05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125645189 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125645189 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccay04054
]
125645189 (IFIH1)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125645189 (IFIH1)
Pattern recognition receptors [BR:
ccay04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125645189 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
Tau95_N
DUF3638
Motif
Other DBs
NCBI-GeneID:
125645189
NCBI-ProteinID:
XP_048726357
EnsemblRapid:
ENSCECG00000008463
LinkDB
All DBs
Position
11:44194600..44234088
Genome browser
AA seq
1011 aa
AA seq
DB search
MSALSPEEQFLCLISCFRHRLTQSIQVAPVLDRLATLSPQEKERIRAVAAQQGDPQAAGL
LLDAVARSCQQQGWIQQFVTALQQGGSDLAACYVNPSLSELPSPAEETEHDVCVHLVQLL
YGTLVDKLRSRQVTNKCVEKGLLQDDDQERILAATENHGDREGARELLSRIIKKKDWFSP
FLAVLRETKHGNLADELSGNVPETENKENGIKQPATTDVDMEAEEPLASEVGEELKQRDE
MNDSLARESIILGTSFEDTSEVLESDVSLLDASVSCLNESMGHSSNTSGDTDEDDTDKGA
SPEPELILRDYQMEVAKPALNGENVIICLPTGSGKTRVAVYITKDHLDKKKRASEPGKVI
VLVNKVPLVEQHFRKEFNPFLKCWYQVTGLSGDSQLKISFPEVVRKNDVIISTAQILENS
LLNATTEDDEEGVQLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKMKNNKFRKENKPLI
PQPQILGLTASPGVGGARTPQKAEEHILKICANLDAYRLMTVEEHVPQLKDQVKEPRKKF
VIADDKRRDPFREKITEIMTEIQNYCHLNPTFEFGTQPYEQWAVKEEKKAAKEENRKERA
CAEHLKKYNDALQINDTIRMIDAYNHLNNFYKEEKSKKTTVNEDDSDEPVASKLDETDKF
LIKLFYAKKKQLKELAGKPEYENEKLTQLRNTLMEEFTKTDEARGIIFTKTRQSAFALFQ
WIKDNTKFEEAGIKAHYLIGAGHNSEFKPMTQNEQREIISKFRAGKVNLLIATTVAEEGL
DIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVASGGSGAVERENVNIFREKMMYK
AIQRVQRMRQEEYLNKIQGFQMQSIMEKKMKAKRDQLKTYKENPSLITFLCKNCHKLKCS
GEDIQVIENMHHVNVKKEFLDLYSIRENKTLQEKHADYQTNGEIMCKDCGQAWGNMMVHR
GVDLPCLKIRNFVVVFKDKKTSNKIFKKWGELPIKFPVFDYAEHYVSSDED
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccctatcgcccgaggagcagttcctctgtctgatctcctgcttcaggcaccgg
ctcacgcagtccatacaggtggcaccggtgctggaccgcctggccacgctgagcccgcag
gagaaggagcggatccgggcggtcgctgcgcagcagggcgacccgcaggcggctgggttg
ctgctggacgcggtggcgcggagctgccagcagcagggctggatccagcagtttgtcact
gcgctgcagcaggggggcagcgacttggccgcctgctacgtgaaccccagcctgagcgag
ctgccctccccagcggaggagaccgagcacgacgtgtgcgtgcacctggtgcagctgctc
tatggcaccctggtggacaagctgaggagccggcaggtcaccaacaagtgtgtggagaag
ggactcctccaggacgatgaccaggagcggatcttagctgcaactgaaaatcatggggat
agggaaggtgcacgtgagttgttaagtagaataataaagaagaaagattggttctctcca
tttttggctgtcctgcgtgaaactaagcatggaaaccttgcagatgaactaagtggaaat
gtaccagaaaccgaaaataaagaaaatgggatcaagcaaccagctactacagatgtggac
atggaagctgaagagccgttggcctctgaagtaggggaggagctgaagcagagagatgaa
atgaatgatagtctggccagagagagcattatattaggaacatcttttgaagacacttct
gaagttttagagtctgatgtcagtttgctcgatgcaagtgtcagttgcttaaatgaaagt
atgggccatagtagcaacacaagtggtgatacagatgaggacgatacggacaaaggagct
tcccctgaaccagagctgattctcagagattaccagatggaggttgcaaaaccagcactg
aatggggagaacgttataatatgtctccctacaggcagtggtaaaaccagagtggctgtt
tacattaccaaagatcatttggataagaagaaaagagcatcagagcctggaaaagttata
gtacttgtgaataaggtaccattagtggagcagcatttcagaaaagagttcaacccattc
ctgaagtgctggtatcaggttactggattaagtggtgattctcagctgaaaatctcattt
cctgaagttgtaagaaaaaatgatgtcattatcagtactgcccagatccttgagaattca
ctgctgaatgcaaccacagaagatgatgaggaaggtgtccagttatcagacttttctctc
attattattgatgaatgtcatcacacccagaaggaaggcgtctataacaatataatgcga
cgttatttaaaagaaaagatgaaaaacaataaattcagaaaagaaaacaaacccctgatt
ccacagcctcagatcctgggactaactgcttcacctggcgtgggaggggcaagaactcct
cagaaagctgaagaacatattctgaaaatttgtgctaatcttgatgcatatagactcatg
actgttgaagaacatgtcccccaactgaaagatcaggtgaaggaaccacgtaagaagttt
gtgattgcagatgacaaaagaagggatccctttagagagaaaattacagaaatcatgaca
gagattcaaaattattgtcacctcaacccaacatttgaatttggaactcagccctatgaa
cagtgggcagttaaagaggagaaaaaagctgcaaaagaagaaaaccgtaaagaacgtgct
tgcgcagagcatttaaagaaatataatgatgccctgcaaattaatgacactatccgaatg
atcgatgcatacaaccacctcaataacttctataaggaggagaaaagcaagaaaacaaca
gtaaatgaagatgattctgatgaaccagtagcatcaaaactagatgaaacagataagttt
ctgataaagttattttacgcaaaaaagaaacagctgaaagagttggctggaaagccggaa
tatgaaaatgagaagctgacacagttgcgaaacaccttaatggaggagttcacaaagact
gatgaagctaggggaattatcttcacaaagactcggcaaagtgcatttgccctttttcag
tggattaaggacaacacaaaatttgaagaagcaggaattaaagctcactaccttattgga
gctggtcataacagtgaatttaaacccatgactcagaatgaacaaagggaaatcatcagt
aaatttcgtgctgggaaagtcaacctacttattgctactactgtggctgaagaaggcctg
gatatcaaagagtgtaacatagttatccgctatggtcttgtcaccaatgaaatagctatg
gtacaggcccggggccgagctcgagctgatgagagcacctatgtactggtggcatcaggt
ggatcgggagctgttgaacgtgaaaatgttaatatatttcgtgagaaaatgatgtataaa
gctattcaacgtgtccaaaggatgagacaggaggagtatttaaataagattcagggtttt
cagatgcaaagtataatggaaaaaaaaatgaaggcaaagagagatcagcttaagacttac
aaggaaaatccatcactaataactttcctttgcaaaaattgccacaaactgaaatgttct
ggggaagacatacaagttatagaaaacatgcatcatgtcaatgtgaaaaaggagttcctg
gacctttacagcataagagaaaataaaacactgcaagaaaaacatgccgattaccaaaca
aatggtgaaattatgtgcaaagactgtgggcaagcttggggaaatatgatggtgcaccga
ggtgtagacctgccttgcttaaagatcagaaattttgtagttgtattcaaggataagaaa
acctcaaacaaaattttcaaaaaatggggagagctgccaatcaagttccctgtctttgac
tatgcagagcattatgtttccagtgacgaagattaa
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