Couchioplanes caeruleus: COUCH_24200
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Entry
COUCH_24200 CDS
T08133
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COUCH_24200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaz03400
]
COUCH_24200
Enzymes [BR:
ccaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COUCH_24200
DNA repair and recombination proteins [BR:
ccaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
COUCH_24200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UQU62137
LinkDB
All DBs
Position
complement(5209447..5211045)
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AA seq
532 aa
AA seq
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MPSDRLTTYRRKRDFARTPEPAGRPLPAAGAGVRRFVVQRHRARRLHYDFRLEIDGVLVS
WAVPKGPTLDPGVRRAAFHVEDHPLEYFDFEGVIPAGQYGGGDVIVWDAGTWEPHAHRAG
RAADPGRDVAAGELHLDMHGEKLRGRFVLVRTRTGSSGREEWLLLHKHDDDAVTGWDAED
HPHSVLSGRTNDEVRADPDRLWRSDRPAARASVALKARDLTDDELAELDDLPATGSWTVF
GRKLRVTNLDKVLFPGRPGEEPVTKRDFLRYAARIAPVSLPYLGGRALNLHRYPNGAGTK
GFWHKELPGHAPEWLPRWDNPGADPGETRTYLVVDEPAALVWAANFGALEWHPWTSLTEA
PQLPTYALVDLDPGTTTSWDELLTLARLHRTAFEHLGIRARPKVTGRRGIQIWVPVAPGP
TFDDTRAWVERLSRTVGAVIPELVSWKWQKSDRNGLARLDYTQNAINKTLVAPYSTRPAP
GAPVSAPIDWDELDDPALRPDGFTVRDVTDRLAQKGDLFRDVLDHTQKLPAL
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
gtgccgtcggaccggctgaccacgtaccggcgcaagcgggacttcgcccgtacgccggaa
cccgccggccgtcccctgcccgcggccggcgccggcgtgcggcggttcgtcgtgcagcgg
caccgtgcgcgccggctgcactacgacttccggctggagatcgacggtgtgctggtcagc
tgggccgtgccgaaggggccgacgctggatcccggcgtgcgccgcgcggccttccacgtc
gaggaccacccgctcgagtacttcgacttcgagggcgtgatcccggccggccagtacggg
ggcggcgacgtcatcgtgtgggacgccggcacctgggagccgcacgcgcaccgggccggg
cgggcggccgacccggggcgcgacgtcgccgccggcgagttgcacctggacatgcacggc
gagaagttgcgcggccggttcgtgctggtccgtacccggaccggatcgtccggccgggag
gaatggctcctgctgcacaagcacgacgacgacgccgtgaccggatgggacgccgaggac
cacccgcactcggtgctcagcggccgtaccaatgacgaggtgagggccgacccggaccgg
ttgtggcgctccgaccgtcccgccgcgcgggcgtccgtcgcgctgaaggcgcgcgacctc
accgacgacgagctcgcggagctggacgacctgccggcgaccggctcgtggaccgtcttc
ggccgcaagctgcgggtgaccaatctggacaaggtcctgttcccgggccgccccggcgag
gaaccggtcaccaaacgcgacttcctccggtacgcggcccgcatagccccggtctccctg
ccctacctgggcggccgggccctgaacctgcaccgctacccgaacggtgcgggcacgaag
ggcttctggcacaaggagttgccgggccacgcgcccgaatggctgccgcgctgggacaac
cccggcgcggacccgggggagacgcggacgtacctggtcgtggacgagccggcggcgctg
gtgtgggcggcgaacttcggcgcgctcgagtggcacccgtggacctcgctgaccgaggcg
ccgcagctgcccacgtacgccctcgtcgacctggacccgggcaccaccaccagctgggac
gagctgctcacgctggcccggctgcaccgtacggccttcgagcacctcggcatccgggcc
cgcccgaaggtcaccggccgccgcggcatccagatctgggtgccggtcgcgccggggccc
acgttcgacgacacccgcgcgtgggtggagcggctgtcccgtacggtcggcgcggtcatc
ccggagctggtcagctggaaatggcagaagagcgaccggaatggcctggcacgcctggac
tacacgcagaacgcgatcaacaagaccctggtggcgccgtacagcacccgcccggcaccg
ggagcgccggtgtccgcgccgatcgactgggacgagctggacgacccggcgctgcgcccg
gacggcttcacggtccgggacgtgaccgaccggctcgcgcagaagggcgacctgttccgc
gacgtcctcgaccacacccagaaactgcccgccctgtag
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