Clostridium cellulovorans: Clocel_3803
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Entry
Clocel_3803 CDS
T01294
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccb
Clostridium cellulovorans
Pathway
ccb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clocel_3803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccb03400
]
Clocel_3803
Enzymes [BR:
ccb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clocel_3803
DNA repair and recombination proteins [BR:
ccb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clocel_3803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADL53473
UniProt:
D9SKQ1
LinkDB
All DBs
Position
complement(4582511..4586032)
Genome browser
AA seq
1173 aa
AA seq
DB search
MRLDGVIDPLISSGEFETLYKSYKQERFPIGIYGLADSSRAFALFSIFEKLDQTMLVLTS
SDVEARNLYEDLQFFTPKVYYFPTKEVVFYNIEAVSGDLRWERLKVLKEIKSNNKKIIVS
SIENLAPNYCPIEYIEQSFFKLKLNDTLITADFSMKLVQSGYERVEIIDARGQFSIRGGI
IDVFPPTSSVPFRIELFGDEIDSIRTFNLESQRSIERVTEIELFPAKEMILTNELVEKGV
ERIEKDLEKVLQVAKKRDDKELEEKIRFSINRNIESLKERWTFETIDSFLTYFYEKPSSF
LDYFKDCMICIEDTDRTSGKLDSVYYEFASNYKSYLEKGDILPGQGELLVPKEETLERLS
LSKLFTLNSIIKASKIFEPRVTVTFNEISLNSYQGKMDLLTEDIRDKKRRGFKTVILSGT
RPRGERFVKTLADYDIVATYKDTIQEIKEGEVVITFGNQLKGYEFPEYKVSIISDKDFFG
ETTRKNAQKKKNVKGVGKISSFAELKPGDYVVHANHGIGVYKGIKQLEVENVKKDYLMVS
YSDGDTLYVPVEQLDLIQKYIGSEGKAPKITKLGGSEWQKAKTKARNSINEIAQDLVKLY
ATREAVKGYSFSKDTTWQQQFEAEFPYEETPDQISAIEEIKVDMEKNKPMDRLLCGDVGY
GKTEVAMRAAFKAVMDGKQAAFLVPTTILAEQHYKTLKKRFTGFPVNIDMISRFRSATQQ
KETLKSLKEGNVDIIIGTHKILGKTVQFKDLGLLIVDEEQRFGVSHKEKIKNAKKNIDVL
TLSATPIPRTLNMSLTGVRSISVIETPPEERYPVQTYVVEYNDQLIRDAVLREINRKGQV
FFVFNRVENIREIADSLAHLIPEARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIE
TGIDIQNANTMIIYDADKMGLSQLYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKA
IKDFTELGSGFKVALRDLEIRGAGNVMGSAQHGQMAAIGYDLYCKMLEDTIKVIKGEIDK
EPIETVIEMKVNAFIPNGYISDETQKIEVYKKIASIETKKDLLDITDELIDRFSDLPPSV
NNLMEISYIRALAKNLGIIEVKDKIKEIHLIFENKDKITKEMVNAIIDKYSKHIMFKQEE
TPTMIFQLKDIKREEILNKLKHFLEYIGETIVN
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgagactagatggggtaattgatccactaatttcaagtggtgagtttgaaaccttatac
aaaagttataagcaagagaggttccctatagggatctacgggctcgcagattcttctagg
gcttttgcgctttttagtatttttgaaaaacttgatcaaacgatgttggtgttaactagt
agtgatgttgaggcaagaaatctttacgaggatttgcaattttttacgccaaaagtctat
tattttccgacaaaagaagtagttttttataatattgaagctgtatcgggagatttaaga
tgggaaagactgaaagtattaaaggaaattaagagcaataataaaaaaataattgtaagc
agtatcgaaaatttggcgccaaactattgccctattgaatatattgaacaatcatttttc
aaattaaaacttaatgatacgttaattacagcagatttttctatgaagctagtacaaagt
ggttatgaaagagtagaaataatagatgctagaggacaattttctataagaggtggaatt
atagacgtatttccgcctacttcgtctgtcccttttagaatagaactttttggtgatgaa
attgattctataagaaccttcaatttggaatctcaaagaagtatagaaagggtaacagag
atagaacttttcccagcaaaagagatgatattgactaatgaattggtggaaaaaggtgtt
gaacgtattgaaaaggatttggagaaggttttgcaagtagcaaaaaaacgtgatgataaa
gagttggaggaaaaaattcgcttttcgataaatagaaacatagaaagtttaaaagaaaga
tggacttttgaaactatcgatagttttcttacatatttttatgaaaaaccttcaagtttt
ttagattattttaaggattgtatgatatgtatagaggatacagatcgtactagtggtaag
cttgatagtgtatattatgaatttgccagtaattataaaagctacttagagaaaggagat
atcctacctgggcaaggagagcttttagtaccaaaagaagaaactttagaacggttatca
ttaagtaagttgtttactttaaattctattattaaagcttcgaagatatttgagccaaga
gttactgtgacatttaatgaaatatccttaaattcataccaagggaaaatggatcttttg
actgaagatataagggacaagaaaagaagaggattcaaaactgtaatattatctggtaca
agaccaagaggagaaaggtttgtaaaaactcttgctgattatgatatagtggcaacctat
aaggatacaattcaagaaattaaagaaggtgaagttgtcataacttttggaaatcagctg
aagggttatgaattccctgaatataaagtatctataatttctgataaggattttttcggg
gaaacaactagaaagaatgcacaaaaaaagaagaatgttaagggtgtaggcaaaataagt
agttttgctgaattaaagccaggagattatgttgtgcatgctaatcatggtataggagta
tataagggtatcaaacaactagaagttgaaaatgtaaaaaaagattatcttatggtatct
tattctgatggagatactttatatgtgcctgtagaacaattggatttgattcagaaatac
ataggtagtgaaggtaaggctcctaagataacaaaacttggtggaagtgaatggcagaaa
gcaaaaactaaggctagaaattctattaatgagattgctcaagatttagtaaaactttac
gctactcgtgaagctgtaaagggatatagtttttctaaggatacaacttggcagcaacaa
tttgaagcagagtttccgtatgaagaaacaccagatcaaatcagtgctatcgaagagata
aaggttgatatggaaaaaaacaagcctatggatagattgctttgtggagatgtaggctat
ggaaaaactgaggttgctatgagagctgctttcaaggctgtaatggatggaaagcaagct
gcatttttggtacctacaacaattcttgcagaacagcattataaaacactgaaaaaaaga
tttacaggttttcctgtaaacatagatatgatatctaggttcagaagtgcaactcagcaa
aaggagactttgaagtctcttaaagaaggaaatgtagatataataattggaacacataaa
attttaggaaagacggtacaatttaaagatttaggtttattaattgtcgatgaagaacag
cgatttggagttagtcacaaggaaaaaataaagaatgcaaagaaaaatatcgatgttctt
actctatctgctacccctattcctagaacacttaatatgtcattaacaggggtaagaagt
ataagtgttatcgaaactcctccagaggagaggtatcctgtgcaaacctatgtggttgaa
tataatgaccagcttataagagatgcagtgctcagagaaataaatagaaaaggtcaagtt
ttctttgtgtttaatagggtagaaaatattagagagattgccgacagtttagctcattta
ataccagaggctcgaataattgtagcccatggacaaatggcagaaaaagaacttgaagag
gttatgagagcattcatgaatcaagagtatgatattcttgtaagcacaacaattattgag
acaggtattgatattcaaaatgctaatactatgattatttatgatgcagataaaatgggc
ttatctcaattatatcaattaagaggaagagttggacgtactaatagaatagcctatgct
tatttaacttacagaaaagataaaataataaccgaagtggcgaaaaagagattaaaggca
ataaaagattttacagagcttggctcaggttttaaagtagcattaagagaccttgagata
agaggagcaggaaatgtaatgggttctgcacaacacggtcaaatggcagccattggttat
gatttgtattgcaagatgcttgaggatactataaaggttattaaaggtgaaattgataaa
gaaccaatagaaactgttattgaaatgaaggtaaatgcctttataccaaatggatatata
agtgatgaaacgcaaaaaattgaagtttataaaaaaatcgcttcaatagagaccaaaaaa
gatttgttggatattactgatgagcttattgatagattttcagatttaccgccttcggtg
aataatttaatggaaatatcctacataagagctttggctaagaatcttggcataattgaa
gtgaaggataaaatcaaagagatacacttaatttttgagaataaagataagataacaaag
gaaatggttaatgctattatagataagtactcaaaacatattatgtttaaacaagaagag
acaccaactatgatatttcaactaaaagacataaaacgagaggaaatattgaataaatta
aaacatttcttagaatatattggcgagaccattgtaaattag
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