Ruminiclostridium cellulolyticum: Ccel_0366
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Entry
Ccel_0366 CDS
T00835
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ccel_0366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cce03400
]
Ccel_0366
Enzymes [BR:
cce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ccel_0366
DNA repair and recombination proteins [BR:
cce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ccel_0366
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ACL74751
UniProt:
B8I5T4
LinkDB
All DBs
Position
417557..418471
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AA seq
304 aa
AA seq
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MATVTDVLKVEIENKVIDIKNPDKLFWPEAGITKLEYVKTMTKLAPFLIKYSKHRMLTSI
RYPHGINDKSFFQKEKPQGTPEWVETVEFNQKNYINLNSAATLVWLCTQAALELHTSFNV
HEKPNHPSSLVFDLDPDDDLHFEDVAELAGRIHETLEALGIMDFIKTSGATGLQIFVPVA
AKFDYDTARSLNEFFAQYFAEKLRSTVTIERMKKKREGKIYFDWQQMWTGKSMITAYSAR
AVKSAAVSAPIEWSELNDVRPEMFTLKNIINRLEQKGDIFEPSLKCDNSPQLNEISKQIE
AAKK
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtaacagatgttctaaaggttgaaatagaaaacaaagtaattgacataaaa
aatcctgataaacttttttggccggaagccggaattaccaaacttgagtatgtgaaaaca
atgacaaaactagctccctttttaataaaatattcgaaacacagaatgttgacgtcaatt
cgttatcctcacgggataaacgacaaaagcttctttcagaaggaaaagcctcagggtacg
cctgagtgggtggaaacagttgaattcaatcaaaaaaactatattaacctcaattcggct
gcgacacttgtatggctctgcactcaggctgcattggagcttcacaccagctttaacgtt
catgaaaaaccaaaccatccgtcaagccttgtatttgatctggatcctgacgatgacctt
cactttgaggatgttgcagagcttgcaggcagaatacacgaaacactggaagccttaggt
ataatggactttattaaaacctccggtgcaacaggactgcaaatatttgttccggtagct
gcgaagtttgactatgacactgcccgcagcctcaatgagttttttgcacaatattttgca
gaaaagctcagaagtacggtgacaatagaaagaatgaagaagaaaagggagggcaaaatt
tattttgactggcagcaaatgtggaccggaaaaagcatgataaccgcttattcagcaaga
gcggtgaaaagtgcggctgtttcggctcccatagaatggagtgagctaaatgatgtacgc
ccagaaatgtttactttgaaaaatattattaacaggctggagcaaaagggagatattttt
gaaccgagtctgaaatgcgacaattcaccgcagttaaacgaaatttcgaaacagattgaa
gctgccaagaagtaa
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