Ruminiclostridium cellulolyticum: Ccel_3090
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Entry
Ccel_3090 CDS
T00835
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cce
Ruminiclostridium cellulolyticum
Pathway
cce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ccel_3090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cce03400
]
Ccel_3090
Enzymes [BR:
cce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ccel_3090
DNA repair and recombination proteins [BR:
cce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ccel_3090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
IstB_IS21
UB2H
DUF3232
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACL77382
UniProt:
B8I056
LinkDB
All DBs
Position
complement(3624126..3627650)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNFFTDPLLKIDEYNTLLSNVREERGPVSVIGPSDSQKVHLIYSLCTHLQKRGLYITYNE
MQARRVYDDFSFFLGDDVLYYPPKETMLYNVEARSNDIIYQRTKTLLNCLEGNYKMVVMS
AEALIQMISPVELFREGIMDFYVGSQVNLDELVSKLVLYGYERVESVEGKAQFAVRGGII
DVFAVNSEHPVRIELFDTDVDSIRHFDETTQRSTNSIDECRIAPARDVVYKEVSREGIIS
KIKKDLADYIKKLKQKENREGVKNISKRVEEDIDSLIEHHYFPGIDRYYPYILESPASVI
DYIESESIIIMDETLRISQRIENVELEHEELAKSLLEKGGILPKGAQWTFSTDSIVDRIL
NFRTITLSAISSNNSLIRPYNQISIPCKSGNSYQNHIDLLVDDIGQLRKREYKIIVLSGP
SGRGHRLVETLATNEIMSSYKEHPEYRIQNGEVVVTHGSLQKGFEYPTAAFVVISDIEVF
GQAKRIKKAKAKRAGNKIKAFSDLNIGDFVVHQAHGIGQYIGIENLSVGEVKRDYLKIRY
QEGDFLYIPTNQLDLLQKYIGSEGKTPRVNKLGGTEWAKTKSRVKESLQQLAAELIKLYA
QRQSAKGHSFSEDTVWQRQFEELFPYQETDDQLKCIDEIKKDMESEGLMDRLLCGDVGYG
KTEVAIRAVFKAVMDGKQVAYLAPTTILAQQLYENFKTRMNDFPVTVDVMSRFRTPAEQK
KIVKSVKAGNTDILIGTHRLLQKDVEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLT
LTATPIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARDGQVF
YMYNRVRGIDLKAQEIRKMIPDARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIES
GLDMPNVNTIVVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAI
KEFTEFGSGFRIAMRDLEIRGAGNLLGSEQHGHLETVGYEMYCKLLDEAVQELSGKEVRT
TDEEMAVDLNVNAYIDNEYISSEEQKIDMYKKIAAIQNENDVIDLKDELIDRYGDIPEEV
ENLMDIAYIKALAVECGFIGIVQKDDTILFQLRKSASTVSKYLGVLMDKYPRRIMLNASS
NPYLSFKLIYSSGRENLANIKILLQYIIKLQYNE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaacttttttacagatcctctcttaaaaatagatgaatataatacacttttatcaaac
gtcagggaggaacggggccccgtatcggttatagggccgtcagattcacagaaggtgcac
ctgatatattctttgtgtactcatttacaaaaaagaggactgtatataacatacaatgaa
atgcaggccaggagggtttacgacgatttttcgtttttccttggggatgatgttttgtat
taccctccaaaagagactatgctctataatgtagaagccagaagcaacgatataatatac
caaaggactaaaacccttttgaactgtttagagggaaactataagatggttgtaatgtca
gctgaagcgcttatacagatgatttcaccagttgaactctttagagaagggataatggac
ttctatgtcggttcacaggtgaatcttgatgagcttgtctcaaagcttgttttgtatggc
tatgaaagagttgaaagtgtggaaggtaaagctcagtttgctgttcgaggtggaataata
gatgtttttgcagtaaacagtgaacatcctgttcgtattgaattatttgatactgacgtg
gattctattaggcactttgatgaaacaacacagagatctacaaattcaattgatgagtgc
agaattgctcccgcaagggacgtagtttacaaggaagtttcaagggaaggaataatttca
aagataaaaaaggatctggctgactacattaaaaagttaaagcagaaggagaacagagaa
ggtgttaaaaatatatcaaaacgggttgaggaggatattgacagtttaattgaacaccat
tattttccggggattgacagatactatccgtatattttagaaagtccagcttctgtaata
gactatattgagagtgaatcaatcattatcatggatgaaaccttaagaataagccagagg
attgagaacgtcgagcttgaacatgaagaacttgccaagagtctgttagagaaaggcggt
attctgcctaaaggagcacaatggaccttttccacagactcaatagtcgatcgcattttg
aatttcaggactataacattgtctgctatttcatccaacaactcactaatcagaccttat
aaccagatatcaataccctgtaagtcagggaactcttaccagaaccatatagacttactt
gttgacgacataggacaacttcggaaaagagaatataaaataattgttctttcaggcccc
agcgggaggggacacagactggttgaaacccttgcaactaatgaaataatgtccagttac
aaagagcatcctgagtacaggatacagaacggagaggttgtggtaactcacggcagcctg
cagaaagggtttgaatacccgaccgcggcatttgttgtaataagtgacattgaggttttc
ggtcaggctaaacgaataaaaaaggcaaaggcaaagagggctggcaataaaataaaagca
ttttccgacctcaatattggtgactttgttgtacatcaggctcacggtataggccaatat
atcggtattgaaaatctcagcgtgggtgaagttaagagggattatctcaaaatccgttat
caggaaggagacttcctttacattccaactaaccagctggatttactccaaaaatacatc
gggtccgaagggaaaacaccgagggttaataagcttggaggtactgaatgggccaagaca
aagagtcgtgtaaaggaatctctgcagcaacttgcggcggagctcataaagctttatgca
cagagacagtctgcaaagggacattctttcagcgaggacaccgtttggcaaaggcagttt
gaggaactgtttccatatcaggaaaccgacgatcaacttaaatgtatagatgaaataaaa
aaggatatggagtcagaagggctcatggacaggctgctttgcggagatgtgggctacggc
aaaaccgaagttgcaataagggctgtattcaaggccgtgatggatgggaagcaggtggct
taccttgcacctacaactatccttgcccagcagctgtatgaaaactttaagacaaggatg
aatgatttcccagtaactgttgatgtcatgagcagattcaggacaccggcagagcagaag
aaaattgtaaaatctgttaaggccgggaacacagatatactcataggcacacacaggctt
ctgcaaaaggatgttgaatttaaggaccttggacttcttgtgattgatgaggaacagcgt
tttggtgtaacccacaaggaaaaattgaaaacgttaaagccaaatgttgatgtcttgact
ctgacagctacacctatccccagaaccctgcatatgtcactggtcggaataagggatata
agtgtactggaggatcctccggaagaaaggtaccctgttcagacctacgttatggaatac
aacatggagcttatacgtgatggtataatccgtgaaatggcaagagatggtcaggttttc
tatatgtacaacagggtaagaggcattgacctgaaggcacaggaaatcaggaaaatgata
cctgatgcaagagttgcggttgctcatggtaaaatgaatgaaaaagagcttgaagatgta
atgtacggctttatcaacggggagtatgatgtgcttgtatgtactactattattgagtca
ggacttgatatgccaaacgttaatactattgttgtagaagatgccgacagaatgggccta
tctcaactttaccagataagaggaagggttggaagatccaacaggcttgcatatgcctat
atcacatataaaaaggacaaggttctttcagaggtggcagaaaaaagacttcaggctata
aaggaatttactgaattcggttcaggattcagaatagcaatgcgggaccttgagataaga
ggggcaggaaacctgcttggatctgagcagcacggacatttggaaaccgtaggttacgaa
atgtactgcaaactactggacgaggctgtgcaggagttgagcggcaaggaagtacgcaca
acagatgaagaaatggcagttgacctgaacgttaatgcttatatagataatgaatatata
agttcagaagagcaaaaaattgatatgtacaaaaaaattgccgcaatacaaaatgaaaat
gacgtcattgatttgaaagatgagttaatagacaggtacggagatatacccgaagaagtg
gaaaatcttatggacattgcatacattaaggcacttgctgtagagtgcggctttatcggt
attgtccagaaggacgatacaatattgtttcagttgcggaagtccgcttcaacagtatcc
aagtatctgggagtgcttatggataagtaccctagaaggattatgcttaatgccagcagc
aacccttatttgtcatttaaattgatatattcctcgggaagagaaaatttggcaaatatt
aagattttgttacaatacattattaaattgcagtataatgaataa
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