Cellulosimicrobium cellulans: CBR64_03080
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Entry
CBR64_03080 CDS
T04858
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cceu
Cellulosimicrobium cellulans
Pathway
cceu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cceu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBR64_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cceu03400
]
CBR64_03080
Enzymes [BR:
cceu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBR64_03080
DNA repair and recombination proteins [BR:
cceu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBR64_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARU50630
UniProt:
A0A1Y0HRM7
LinkDB
All DBs
Position
complement(721486..725229)
Genome browser
AA seq
1247 aa
AA seq
DB search
MNLTGILPALLADPAATAAVEHVRARGEADVVGPAGARPPLLAAMAGARATGPVDGAGDR
ASSGTVWAPGSRPLVVVTATGRDADELAASVRAYLPDELADLVAVLPSWETLPHERLSPR
ADTVAKRIAVFRRLAHPDPEVGPSGPVRVLVMPVRALLQPVVDGLGELEPVELHAGSTAD
LTDVAERLVAAAYTRVDMVERRGEFAVRGGILDVFPPTEDHPLRVEFWGDEVSEIRWFAV
ADQRSLEIAEHGLWAPPCREILLTESVRARAAALVEQLPGAVEMLDKLAAGVAVEGMESL
APVLVDRMVPVLELVPDDALLVLDDAERVRRRAHDLVATTEEFLAAAWTGAVAGGASPLD
LSAASFETFAEVRAVAQRRGLGWWTLSSFALDNPDLDLPTDAAADPGARAADGAGASSGT
TAAHVGESADGVPTFTLGARDVESYRGDVSRALDDVRGLQHAGWRLVLTTEGHGPAKRMV
EQLGAVDTPARLVPRLDDEPEGGIVLVTPAMVGKGFVAPELRLAVFSEADLTGRAGTSTR
DMRKMPSRRRNVVDPLQLKAGDFVVHEQHGVGRFVELVQRTLGTGGNAATREYLVIEYAS
SKRGQPGDRLFVPMDQLDQVTKYTGGESPSLNKMGGADWAKTKTRARKHVKEIAGELIRL
YSARMATQGHAFGADTPWQRELEDAFAYVETPDQLATIDEVKADMEKTVPMDRLVCGDVG
YGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHLETFSERYAGFPVTVKALSRFQTAKE
SEETIEGLRLGKVDVVIGTHRLITGSIRFKDLGLVIIDEEQRFGVEHKETLKQLRTNVDV
LAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAYEEKQIAAALRRELLREGQ
VFYVHNKVETIDRTASRLRELVPEARVGVAHGKMNEHQLDQVIRAFWEKELDVLVCTTII
ETGLDISNANTLILERADMLGLSQLHQLRGRVGRGRERAYAYFLYPPERPLTETAHDRLA
TIAAHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVANYRGDGP
EEQPEISIELPVDAHLPESYIATERLRLEAYKKIAAATDAPELAEVRAELVDRYGALPDV
ASALFDVADFRNHARRAGLTDVTAQGKFIRFAPVDLAESAQLRLKRLYPGTLLKPAIRAF
LVPYPTTARIGGRPLRGAEVLTWARQLIDAVVLGEVSAAATVGTSSR
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggcatcctgcccgcgctgctcgccgaccccgccgcgacggcggcggtc
gagcacgtgcgcgcccgtggcgaggcggacgtggtcggcccggccggcgcgcgcccgccg
ctgctcgccgcgatggcgggggcgcgggcgacggggccggtcgacggggcaggcgaccgg
gcgtcgtccggcacggtgtgggcgcccgggtcgcgcccgctcgtcgtggtgacggcgacc
gggcgcgacgccgacgagctcgcggcgagcgtgcgcgcctacctgccggacgagctcgcg
gacctggtcgcggtcctgccgagctgggagacgctgccgcacgagcggctgagcccgcgc
gcggacaccgtcgccaagcgcatcgccgtgttccgtcgcctggcgcacccggacccggag
gtcgggccgtcgggccccgtccgcgtgctcgtcatgccggtgcgcgcgctcctgcagccc
gtcgtcgacgggctgggcgagctcgagccggtcgagctgcacgccgggtcgacggcagac
ctgaccgacgtcgcggagcggctcgtcgcggcggcgtacacgcgcgtggacatggtcgag
cgccgcggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggac
cacccgctgcgcgtggagttctggggcgacgaggtgtcggagatccgctggttcgcggtc
gcggaccagcgcagcctcgagatcgcggagcacgggctgtgggcgccgccgtgccgcgag
atcctgctcaccgagtccgtgcgggcgcgcgcggcggcgctcgtcgagcagctgccgggc
gcggtcgagatgctcgacaagctggccgcgggcgtcgcggtcgagggcatggagtcgctg
gcgccggtgctcgtcgaccggatggtccccgtcctcgagctcgtgcccgacgacgcgctg
ctcgtgctggacgacgccgagcgggtccgccgtcgcgcgcacgacctcgtcgcgaccacg
gaggagttcctcgcggccgcctggacgggcgcggtcgcgggcggggcgtcgccgctcgac
ctgtcggcggcgtcgttcgagaccttcgcggaggtccgtgcggtcgcccagcgccgcggc
ctgggctggtggacgctctcgtcgttcgcgctcgacaacccggacctcgacctgccgacg
gacgcggccgccgaccccggtgcgcgggccgcggacggcgcgggcgcgtcgtcgggcacc
accgccgcgcacgtgggcgagagcgcggacggcgtcccgaccttcacgctcggcgcgcgc
gacgtcgagtcgtaccgcggcgacgtctcgcgcgcgctggacgacgtgcgcgggctgcag
cacgcgggctggcgcctggtgctcacgaccgagggccacgggcccgccaagcgcatggtc
gagcagctcggggcggtggacacgcccgcgcgcctcgtgccgcgcctcgacgacgagccc
gagggcggcatcgtcctcgtcaccccggccatggtcggcaagggcttcgtcgcgccggag
ctgcgcctcgccgtcttctccgaggccgacctcacgggccgggcgggcacgagcacgcgc
gacatgcgcaagatgccgagccggcgccgcaacgtcgtcgacccgctgcagctcaaggcg
ggcgacttcgtcgtgcacgagcagcacggcgtggggcggttcgtcgagctcgtgcagcgc
acgctcggcacgggcggcaacgcggcgacgcgcgagtacctcgtcatcgagtacgcgtcg
tcgaagcggggccagcccggggaccggctgttcgtcccgatggaccagctcgaccaggtc
accaagtacacgggcggcgagtccccgagcctcaacaagatgggcggggccgactgggcc
aagacgaagacccgcgcgcgcaagcacgtcaaggagatcgcgggcgagctcatccgtctg
tactcggcgcgcatggcgacgcaggggcacgcgttcggcgccgacacgccgtggcagcgc
gagctcgaggacgcgttcgcgtacgtcgagacgccggaccagctcgcgacgatcgacgag
gtcaaggcggacatggagaagacggtccccatggaccggctcgtgtgcggcgacgtcggc
tacggcaagaccgagatcgcgatccgcgcggcgttcaaggccgtccaggacggcaagcag
gtcgcggtgctcgtcccgacgacgctcctggtccagcagcacctcgagacgttctcggag
cggtacgcgggcttccccgtcacggtgaaggcgctctcgcgcttccagacggccaaggag
tccgaggagacgatcgaggggctgcggctggggaaggtcgacgtcgtcatcggcacccac
cggctcatcacgggcagcatccggttcaaggatctcgggctcgtcatcatcgacgaggag
cagcggttcggcgtcgagcacaaggagacgctcaagcagctgcgcaccaacgtggacgtg
ctcgccatgtccgcgaccccgatcccgcgcacgctcgagatggccgtcacgggcatccgg
gagatgtcgacgctcgcgacgccgcccgaggagcgccaccccgtgctcacctacgtgggt
gcgtacgaggagaagcagatcgcggcggcgctgcgccgcgagctcctgcgcgagggccag
gtgttctacgtgcacaacaaggtcgagacgatcgaccgcaccgcgtcacggctgcgcgag
ctcgtgcccgaggcccgcgtgggcgtggcccacggcaagatgaacgagcaccagctcgac
caggtgatccgggcgttctgggagaaggagctcgacgtcctcgtctgcacgacgatcatc
gagaccggcctggacatctccaacgcgaacacgctcatcctcgagcgcgcggacatgctc
ggcctgtcccagctccaccagctccggggccgcgtgggccgtggccgggagcgcgcgtac
gcgtacttcctctacccgccggagcggccgctcaccgagacggcgcacgaccgcctcgcg
accatcgccgcgcacaccgacctcggcgccggcatgcaggtcgcgatgaaggacctcgag
atccgcggcgcgggcaacctgctcgggggcgagcagtccgggcacatcgcgggcgtcggg
ttcgacctctacgtgcgcatggtgggggaggccgtcgcgaactaccggggcgacggcccc
gaggagcagccggagatctccatcgagctcccggtcgacgcgcacctgcccgagtcgtac
atcgcgaccgagcggctgcggctcgaggcgtacaagaagatcgccgccgcgaccgacgcg
cccgagctcgccgaggtgcgggccgagctcgtcgaccggtacggcgcgctgcccgacgtc
gcgtcggcgttgttcgacgtcgcggacttccgcaaccacgcgcgccgcgcggggctcacg
gacgtcacggcgcagggcaagttcatccggttcgcgccggtcgacctcgcggagtcggcg
cagctccggctcaagcgcctgtacccgggcacgctgctcaagcccgcgatccgcgcgttc
ctcgtcccgtacccgacgacggcgcgcatcggcggccgcccgctgcgcggtgccgaggtg
ctcacgtgggcgcgccagctcatcgacgccgtggtcctcggcgaggtgagcgcggcggcg
acggtaggaacatcctcccgctga
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