Campylobacter coli RM1875: YSQ_02920
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Entry
YSQ_02920 CDS
T03164
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ccf
Campylobacter coli RM1875
Pathway
ccf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSQ_02920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccf03019
]
YSQ_02920
Messenger RNA biogenesis [BR:
ccf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YSQ_02920
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_2
KhpA-B_KH
MurD-like_N
dUTPase
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AHK72934
LinkDB
All DBs
Position
complement(582152..583705)
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AA seq
517 aa
AA seq
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MIESLIALITAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAIEYEAELILKDAKNSIL
NAELEVKKKYEDKTHKIQKEFNQKFDELSKKEQKLQLQEESLKENQEELLRSKKQMLDLQ
SDADKLKKQYQTKLNDVLNILEHSAGLTQDEAKNIILEKVEENSRNEIAHIVRRYEEEAR
NEAKRKANYIIAQATSRFAGEFAAERLINVVNIKNDELKGRIIGKEGRNVKTLEMVLGVD
IIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRIQPARIEEIHEKVCKEFDNAILEEG
ETILMDLGLSKVHPEITKLIGKLKYRASYGQNALAHSLEVAHLAGIIAAECGGDENLARR
AGILHDIGKALTHDFEGSHVDLGAELCKRYKEHPVVINAIYAHHGHEEATSIESAAVCTA
DTLSAARPGARREVLEAFLRRVSELEEIAKSKEGIKNAYAINAGREIRVIANAKLVNDDE
SVLLAKEIAAEIQEKMQYPGEIKVNVIRELRAIEYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatcacttatcgcacttataaccgctatagtcggtcttggaataggatattta
gttgcaaaaaaaatcaatgatgctaaatatgaaatttttgttgagcaagcaaaagcgaaa
gcaaaagctatagaatacgaagctgaactgattttaaaagatgccaaaaattcaatcctt
aatgccgaacttgaagtgaaaaaaaaatacgaggataaaactcacaaaattcaaaaagaa
ttcaatcaaaaatttgatgaattatccaaaaaagagcaaaaacttcaacttcaagaagaa
agcttaaaagaaaatcaagaagaattattacgctctaaaaaacaaatgcttgatttacaa
tcagatgctgacaagcttaaaaaacaataccaaacaaaactcaatgatgttttaaatatt
ttagaacattcagcagggctcactcaagatgaagcaaaaaatatcattcttgaaaaagta
gaagaaaactcacgcaatgaaattgctcatatcgttaggagatatgaagaagaggctaga
aatgaggctaaaagaaaggcaaattacatcatagcacaagcaacctctcgttttgcagga
gaatttgctgctgaaagacttattaatgttgtcaacatcaaaaacgatgagttaaaaggg
cgtatcataggcaaagaaggacgcaatgttaaaaccttagaaatggttttaggagtagat
atcatcatcgatgatacacctggagctatcatagtaagttgctttaatctttatcgccgt
gctattgcaactaaggtgattgaacttttagtagaagatggaagaattcagcctgctcgc
atagaagaaattcacgaaaaagtatgcaaagaatttgataatgctattttagaagaaggt
gaaactatactgatggacttagggctttctaaggtccatccagaaatcaccaaacttata
ggaaagcttaaataccgcgcaagctatggacaaaatgctttagcacattctttagaagta
gctcatttggcaggaatcatcgctgctgagtgtggaggggatgaaaatttagcacgacgc
gcaggaattttacacgacataggcaaagctttaacgcatgattttgaaggctctcatgta
gacttaggagcagaactttgcaaacgctataaagaacatcctgtggttattaatgctatt
tatgctcaccatggacatgaagaagctacaagcatagaatcagcagccgtttgcacagcc
gatacgctcagcgctgcaagaccgggtgctagacgcgaagtcttagaagctttcttaaga
agagtaagcgagcttgaagagattgctaaaagcaaagaaggtattaaaaatgcttatgcg
attaatgcgggaagagaaattcgtgtcattgcaaatgcaaaacttgtaaatgatgatgaa
agcgtgcttttagccaaagaaatagctgctgaaattcaagaaaaaatgcaataccctgga
gaaatcaaggtaaatgtcatacgcgaactaagagccatagaatacgccaaataa
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