Cephus cinctus (wheat stem sawfly): 107263028
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Entry
107263028 CDS
T07523
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107263028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107263028
03041 Spliceosome [BR:
ccin03041
]
107263028
03009 Ribosome biogenesis [BR:
ccin03009
]
107263028
03016 Transfer RNA biogenesis [BR:
ccin03016
]
107263028
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107263028
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107263028
Spliceosome [BR:
ccin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107263028
Complex C
U4/U6.U5 tri-SnRNP related factors
107263028
Ribosome biogenesis [BR:
ccin03009
]
Eukaryotic type
Pre-60S particles
Helicases
107263028
Transfer RNA biogenesis [BR:
ccin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107263028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
Helicase_C
nSTAND3
AAA_22
ATPase_2
Motif
Other DBs
NCBI-GeneID:
107263028
NCBI-ProteinID:
XP_015585297
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MADFSEDLFDVFEESSESVVEIIPTTSQESNLKTTKIVKNADVEIGAKRDLDESDTDYSG
KRQKTESILEDINIDDLASRITVHTIETIESCTHEVAIPPGQEYIPLENKSIKPAKEYKF
VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLRDKQRVIYTTPIKALSNQK
YREFFEEFKDVGLITGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMR
DKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVSHLHRQPCHVVYTDYRPTPLQH
YIFPVGGDGIHLVVDEAGQFKEENFNRAMACLQMGDAAKGDTKGRKGGLKGTNAGQSNIF
KMVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTIEEKKLVDEVFENAMDVLSEED
RRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPART
VLFTAPRKFDGRDFRWITSGEYIQMSGRAGRRGIDEKGIVILMIDERVSPTVGKDIVQGK
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPELYNKVKNLEAEYEAI
QIEKFQDISSYHDIREQLDKLSIEFRSFLTKPDYLLPFLQPGRMVKVKNESDTFDWGIIV
NFKKKTPKNPMLEKTVIVVDILLHISSDSTEGSPIPCRPGEDGDVEVVPVLHTLLSEISS
LRVYYPKDLRPSDNRRSVLKTIQEVKKRFPDGPPLLNPITDMKIEDSAFKDIVKRIEVLE
ERLFAHPLHKNPQLNELYTQFIRKEELGTQLKQAKTELKQAKSVLQMEELKCRKRVLRRM
AYCTAADVIELKGRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEM
PRSTEELSGPLRQMQDLARRIAKVSTDAKLELDEAAYVDKFKPYLMDVMYAWCKGASFLQ
ICKMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKIIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttcagtgaagatttgtttgatgtattcgaagaatctagtgaaagtgttgtt
gagataattccaacaacatcacaagaaagtaatttgaagactacaaaaatcgtgaaaaat
gctgacgtggaaattggagctaaacgagatcttgatgaaagtgatacagattactctggc
aaaagacagaagacagaatccattttggaagatattaatatagatgatttagcatcacgg
ataacagtccatacgatagagactattgagtcttgtactcatgaagttgctattccacca
ggccaggaatatataccactcgaaaataagtcgatcaagccagccaaggaatacaaattt
gttttagatccatttcagaaggaggctatattatgtatagagaacaatcaatctgttcta
gtatcggctcatacatcagctggtaaaactgtagttgctgagtatgcgatagcatcgtct
ttaagagacaagcaacgagtaatttatacgacgcctataaaagctctaagtaaccagaaa
tatagagaattctttgaagagttcaaagatgttggtttaatcacaggagatgttaccatt
aatccaacagccagtgttcttattatgactacagagattttgagaaatatgttgtacagg
ggttcagaggtaatgcgagaagtcggttgggtaatattcgacgaaattcattatatgcgt
gacaaagaaagaggtgtagtgtgggaagaaactttaatactccttccagataatgtacat
tacgtgtttctttccgcaacaattcccaacgctcgacaatttgctgaatgggtttctcat
ttacaccgccaaccttgtcacgttgtatatactgactatagaccaactccgctgcagcat
tatatatttcccgttggcggagatggtattcacttggttgttgatgaggcaggacaattt
aaagaagagaattttaaccgagccatggcgtgcctgcaaatgggcgacgctgcaaaaggt
gatacaaagggccgtaaaggtggacttaagggaaccaatgctggccaaagtaatattttc
aagatggtgaagatgataatggagaggaactttgctcctgtaatcattttcagcttttcc
aagaaagattgtgagatctatgctatgcaaatggccaaattagacctgaatacgatagaa
gaaaagaaattggttgatgaagtatttgaaaatgcaatggatgtcctcagtgaagaggat
agacgactgcctcaggtggagaacgtgttgccattattacgacgtggtataggcatacat
catggtggtctactaccaatattaaaagaaactgtagaaattctgtttggtgagggttta
attaaagcattatttgctaccgaaacctttgccatgggcttaaacatgcctgccagaaca
gtcctcttcacagcacctagaaaatttgatggaagagacttccgctggatcacttccggt
gaatatattcaaatgtctggcagagctggcagacgaggtatagatgagaagggtatagtt
attctcatgattgacgagagagtcagtcctactgttgggaaagacattgtacaaggaaaa
cctgatcctattaattctgcatttcatcttacgtacaatatggttctcaatcttttgagg
gttgaagaaattaatcccgagtacatgttagagcgtagtttttatcagtttcaaaatcaa
gccagcatcccagagttatataacaaggtgaaaaacttggaagctgaatatgaggctata
caaattgagaaattccaagatatttccagctatcacgatatacgggagcagctcgataaa
ctttcaatagaatttcgaagttttttaacaaaaccggattatttgctaccatttttacaa
ccaggaagaatggtgaaggtgaaaaatgaaagtgacacgttcgattggggaataatagta
aattttaaaaagaaaactccgaaaaatcctatgctggaaaaaactgttattgtcgtagat
atattgctccatatttctagtgactctactgaaggttcaccaattccatgccgacctggt
gaagatggtgatgtagaagtggtgcccgtcttacatactttactttctgaaatcagttca
cttagagtttattatccaaaagatttaagaccttctgataatagaagaagcgtccttaaa
acaatacaggaagtaaaaaagagatttccagatgggccaccattgctcaatcctattact
gatatgaaaatcgaagattcagcattcaaagatatagtaaagcgcattgaagtattagaa
gaacgattattcgcacatcctttgcacaagaatccacaattgaacgaactgtacacacaa
tttatacgaaaagaagagctaggtactcaattaaaacaagctaagacagaattaaaacaa
gccaaatccgtattacaaatggaggagctcaaatgtagaaaacgtgttttacgaagaatg
gcttattgcaccgcagcagatgtcatagaactaaaaggtcgagtagcttgtgagcttaac
ggagctgatgagctcttgatgactgaaatgattttcaatgggctgttcaacgccttgagt
gttccccaaatggtagcactgattagttgcttcgtttgtgatgagaaatctaatgaaatg
ccgagaagtacagaagaattgagtggcccactcaggcagatgcaggatctagctcgcaga
atagctaaagtatctacagatgctaaattagaattggatgaagccgcttatgtagataaa
ttcaaaccgtatctcatggatgtcatgtatgcctggtgtaaaggtgcgagttttttgcaa
atatgcaaaatgaccgatatattcgaaggctctattatacggtgtatgcgtcgtctagag
gaggttctcagacagctttgccaagcagccaagaatataggaaatacagatttggaaaat
aaatttagcgaagccataaagataattaagagggatattgtttttgccgcttctttatat
ttataa
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