Cephus cinctus (wheat stem sawfly): 107267498
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Entry
107267498 CDS
T07523
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03022
Basal transcription factors
ccin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107267498
09124 Replication and repair
03420 Nucleotide excision repair
107267498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccin03021
]
107267498
03400 DNA repair and recombination proteins [BR:
ccin03400
]
107267498
Transcription machinery [BR:
ccin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107267498
DNA repair and recombination proteins [BR:
ccin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107267498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
107267498
NCBI-ProteinID:
XP_015594793
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSNTISGKNLLRPTGLRCKNLHEYLKSRPPDILNKLYHNPPICLAVFRELSEIARHYVMR
LLFVEQPVPQAVIASWCSKLHSEEHQRVVQVLNELNVWNEASIPGGLPGWILNSTFKKNL
KIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKLDEEDGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGQNKPL
SSDLEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITAAQIVGYLRQHAHSKMIEAGPPTLPPTIADQIKLWENERNRFLFSEGVLYSQFLSQT
DFEVLRDYALNTGVLIWQSERKRTVVVTKAGHDDVKRFWKRYTKGSN
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatacgataagtgggaaaaatttgttgagacctacaggattacggtgtaaaaat
ctccatgaatatctcaaatcaagaccaccagatattttgaataaactctaccataatcct
ccaatatgtctggcagtgtttcgtgaactttctgaaatagctcgccactatgttatgaga
ttacttttcgtggaacagcctgttccacaggcagtcatagcttcatggtgttcgaaactt
cattctgaagagcatcagagagttgtacaagttcttaatgaattgaatgtatggaatgaa
gcctcaattcctgggggcctacctggatggatattaaattcaacctttaaaaagaatctt
aagattgtactgttaggaggtggtaaaccatggactatgtctaatcaattggaaactgat
agcaaacctagagatgttgcttttcttgattcgtatgctttagagcgctgggagtgtgtc
ttacattatatggtgggctcgcagcaacaagaaggaatatctgctgatgcagttagaatt
ttgctccatgctggactaatgaaacttgatgaagaagatggcagtcctgtgattacacaa
gctggttttcaatttcttttactcgatactgcctctcaagtgtggtactttattttacaa
tatttggatactatcgaggccagaggcttagaccttgtcgagtgcttaactttcttgttc
caattgaacttttctacacttggcaaggattacagtactgaaggcatgtcggaaggactt
ctaacttttctgcaacacctacgtgaatttggtttagtttatcagcgtaaacggaaagca
ggaaggttctaccccaccagattagccttaaatattgccacaggacaaaataaaccactc
tccagtgatctggaaaaggaaggctacattgttgttgaaacaaactacagggtgtatgca
tacaccaattcgaatttacaggttgcgctccttggtttattctgtgaaatgttatataga
tttccaaatctggtggtatcaatcctcacaagagattctgtcagacaggctctaaaaagt
gggatcacagcagcccaaattgtaggttatttgcgacaacatgctcatagtaaaatgatt
gaggctggaccgcctactcttccgcccacaatagctgatcaaattaaattgtgggaaaat
gaaagaaatcgatttttgttcagtgagggtgtactttatagtcaattcctttctcaaacc
gattttgaagtacttcgagattatgctctaaatacgggagtacttatttggcaaagtgaa
agaaaaaggacagtggtcgttacgaaggcaggacatgatgatgtaaaaagattttggaaa
agatacactaagggttccaattga
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