Cephus cinctus (wheat stem sawfly): 107268030
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Entry
107268030 CDS
T07523
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107268030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccin03041
]
107268030
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107268030
Spliceosome [BR:
ccin03041
]
Complex A
U2 snRNP components
U2 related factors
107268030
Complex B
107268030
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BcrAD_BadFG
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
107268030
NCBI-ProteinID:
XP_015595854
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MVRSGDKERHYRRRSRSRSRSRSATPEKKRRRSRSRERERDRDKGRHRERRSRSRERDRD
RGERRERFDRERERDRKRGDSKEKRLTGSKSSRSGKERSNRSRSRDRKDKEKGETEELPF
DHTKLDKEEEQKRLELEMQKRRERIERWRAERKKKELEATKKDGKVSILANLQLPMKKWS
LEDDSDEETPVVQTGNKDVKEEEEEEGVIKEEIEEVKEEVKEEEEEVDPLDAFMAEVQEE
VRKVNKVDNKGPKASNNGAGLGAPQTGGVVIVTGVAKKKIQKQKGELIEQNQDGLEYSSE
EEGENLHETAAGIANKQKRELAKVDHASTEYQPFRKSFYVEVPEIARMSPEEVEAYKEEL
EGIRVKGKGCPKPIKSWAQCGVTKKELEVLKKLGYDKPTPIQCQAIPAIMSGRDLIGIAK
TGSGKTLAFLLPMFRHILDQSPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHV
CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDM
GFEPQVMRIMENVRPDRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHV
VVLEEDQKFYKLLEILGHYQDKGSVIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCD
RDSTIIDFKAGRTKLLVATSVAARGLDVKQLVLVINYDCPNHYEDYVHRCGRTGRAGNKG
YAYTFITPEQERYAGDILRAHELATVPIPDALRQLWEGYKARQAADGKKVHTGGGFSGKG
FKFDESEAALANEKKKFQKAALGLQDSDDEDIENDIDQQIESMLAPKRTVREIARPSAAN
LSVPGQPVPSATDKLELARRLASKINIAKNLGAEAKGATQQAAEAILKGAGPTNLITAKT
VAEQLAAKLNTKLNYQPREEDLVEGEGEPGEQTFRKYEEELEINDFPQQARWRVTSKEAL
AQISEYSEAGLTVRGTYIATGKTPPEGERKLYLAIESTSELAVSKAKAEVSRLIKEELIK
LQSSGTHTACRGRYKVL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggttcgcagtggtgacaaagagaggcattatagaaggcgctcaagatctaggtccagg
tctcgttctgccactcctgagaaaaaacgacgacgatctcgcagtagagaacgcgaacga
gatagggataagggaagacacagggaaagacgtagtcgctctagagaacgagatagggat
cgtggagaacgaagagaaagattcgatagagaaagagagcgtgacagaaaacgtggagac
agtaaagaaaagcgtcttacaggatcaaaatcctcccgctctggtaaggagagatcaaac
agatcacgatcacgggatcgtaaggataaagaaaagggtgaaactgaagagttgcccttt
gatcatacaaaacttgataaggaagaggaacaaaaaagactggaactagaaatgcaaaaa
cgaagagagaggatcgagagatggcgagctgaaagaaagaaaaaggaactcgaagcaact
aaaaaggatggcaaagtgtcaatcctagcgaatcttcaacttcctatgaagaagtggtca
ctggaagatgatagcgatgaagaaacgcctgtcgtccagacgggcaacaaggatgttaaa
gaagaagaagaagaagaaggagtaattaaagaggaaattgaagaagtgaaagaagaagta
aaggaagaagaagaggaagtcgatccgcttgatgcatttatggcagaagttcaggaagaa
gtgcggaaggttaataaagtagacaataagggtccaaaagcttcaaataatggtgcagga
cttggagcaccacagactggaggtgtggtcatcgtaacaggtgtagccaagaaaaagatt
caaaagcagaaaggagaattgattgaacaaaatcaagatggtctggaatactcgagtgaa
gaggaaggcgaaaatcttcacgaaaccgcagcaggaatagcaaacaaacaaaaacgcgaa
ttagctaaggttgatcatgcgtcgactgagtatcagccattccgcaaatctttctacgtg
gaagtacctgaaatcgcaagaatgtctcccgaagaggttgaggcttacaaagaagaactt
gaaggcattcgagttaagggaaaaggttgtcctaaacctattaaatcttgggctcagtgt
ggcgtcacaaaaaaagaacttgaagttttaaagaaactcggttacgacaaaccaacgcca
attcagtgtcaagcaattccggctataatgtctggtcgcgatttaataggtatcgctaaa
acaggaagtggaaagacattagcgtttctgttgcccatgttcagacacatcctggatcag
tcaccattagccgatggagatggacctatagcccttataatgactccaactcgtgaactc
tgcatgcaaattggacgggactcaaaaaaatttacaaaatctttaggattatcgcatgta
tgcgtatatggtggtacgggtatatctgaacaaatcgcagaattaaagagaggcgccgag
atcatcgtttgtacaccaggtcgaatgattgacatgctagcagccaatagtggacgagtg
acaaacttaagaagagtcacgtacgttgtccttgacgaagctgatagaatgttcgacatg
ggttttgaaccacaagttatgagaatcatggaaaatgtacgaccagatagacaaactgtt
ttatttagtgcaacgttcccaaggcagatggaagccctggctagaagaattctcacacgg
ccagtagaggttcaggtgggtggacgttcagtcgtctgcaaggacgtagaacaacacgta
gtggtactcgaggaagatcaaaaattttacaaactattagagatcttaggacattaccaa
gataaaggatctgtaataatattcgtggacaagcaagaaaacgctgatactttgttgaag
gacttgatgaaggcatcttattcctgtatgtctctgcacggtggtatagatcagtgtgac
agagactcgacaattattgactttaaagctggtagaacaaaactactggtagccacgtcg
gtagctgcgagaggcctcgacgttaagcaacttgtactagttatcaattacgattgcccc
aatcactacgaggattacgtacatagatgtggaagaacaggacgtgctggcaataaagga
tacgcttacacgttcatcacacccgaacaagaacgatatgccggtgatattcttcgtgcc
cacgaattagccacggtaccaattccagatgcattgcgtcaactttgggaaggttacaaa
gctcgacaagcagctgatggcaaaaaagttcatacaggtggtggatttagtgggaaagga
ttcaaatttgatgaatccgaagcagctctggccaacgagaagaagaaattccagaaggct
gcactaggccttcaggattctgatgacgaggatattgagaatgacattgaccagcagatt
gagagcatgttggcacctaagcgtacggttcgagaaatcgccaggccatccgctgcgaac
ttatccgtaccaggtcagccggtacctagtgcaactgacaaactggaattagctagaagg
ttagcatcgaagatcaacatcgcaaagaatcttggagctgaggctaagggtgctacgcaa
caggctgcagaggccatcctcaaaggtgccggaccaacaaatcttataacggccaagact
gttgctgaacagctagcagcaaaacttaatacaaaactgaactatcaaccaagagaagaa
gatcttgttgaaggcgagggagaacctggtgaacaaactttccgcaagtatgaagaagaa
ttggaaattaacgatttccctcagcaggccaggtggagggtaaccagcaaggaagctctg
gcacaaatttccgagtattccgaagctggcctgacagttcgtggaacgtacatcgcaaca
ggaaaaacacctccagaaggagagcgaaaactttacttagctatcgagtcgacaagcgag
ttggcagtgagcaaagccaaggccgaagtatccaggctcatcaaggaagaattgataaag
cttcagtcatctggtactcatacggcatgtcgcggccgttacaaggttctttaa
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integrated database retrieval system
