Curtobacterium citreum: QPK07_01675
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Entry
QPK07_01675 CDS
T09163
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ccit
Curtobacterium citreum
Pathway
ccit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QPK07_01675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccit03400
]
QPK07_01675
Enzymes [BR:
ccit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QPK07_01675
DNA repair and recombination proteins [BR:
ccit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QPK07_01675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WIJ45700
LinkDB
All DBs
Position
321914..324418
Genome browser
AA seq
834 aa
AA seq
DB search
MSPVSRRTTVQVGDRRIALSNTDKVLYPETGTTKGQVLAYYERVAPWMIPHVKDRPVTRK
RWANGVDGKVFFEKNLPDSAPDWIRHHTIAHKEHDTEYPVVDDLPTLVWMAQQAALELHV
PQWRFGPRGGQQHPDRLVLDLDPGEGVGLPECVEVAVAARELLQGMGLDPHPVTSGSKGI
HLYAALDGRSAAQHVSEVAHELARALEQDLPDLVLSSMSRAERAGKVFVDWSQNNGNKTT
IAPYSLRGRDRPTVAAPRTWDELTSRGLAQLTLDEVLDRLEERGDRLHPVASASLSVGRP
DSGHWDGDRTQRANDAEQPGRDRLAAYRAKRDASRTPEPVPEGAPTVRKDGTPTFVVQEH
HATRDHYDFRLEHDGVLVSWALPKGEPTDPGKNHLAVQTEDHPLEYGGFEGTIPHGEYGA
GTVTIWDDGTYELEKWREGEEVIVTLHGRTNGNRRLALLHTRGRGRGKDGDEKNWLIHRT
KEQPSRTPDEGGAAPSRGSGSGAASDGAGATTPTERRPMLASPVSGTPSFDPDAWAFEMK
WDGVRALATVRDGAVTLRSRNGNDLTAQYPELQELADRAGVDGVFDGEVVALDEAGRPSF
QRLQDRMGLTRKREVDAAQATTPVRFLLFDVLEADGHDLVRLGYDARRDALATVVDPGGA
IEVPPAFDGDFDAAVAESARLRLEGVVAKKRRSRYTEGRRSESWVKVKHLAAQEVVVGGW
KPGAGRRAGGIGSLLLGVPGPDGLEYVGKVGTGFRDRDLDEIADVLRSRARKTSPFVDVP
RPDARDAHWVRADRVGEVVFAEWTADGRLRQPSWRGWRPDKDPDDVVREAGPDT
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccgtctcccggcgcacgacggtccaggtcggggaccgccgcatcgcactgtcc
aacaccgacaaggtcctgtacccggagacggggacgaccaaggggcaggtgctcgcctac
tacgagcgggtcgcgccgtggatgatcccgcacgtcaaggaccgtccggtgacacggaag
cgctgggcgaacggcgtcgacggcaaggtgttcttcgagaagaacctgccggactccgcg
cccgactggatccggcaccacaccatcgcgcacaaggagcacgacaccgagtacccggtc
gtcgacgacctgccgacgctcgtgtggatggcgcagcaggccgcgctcgagctgcacgtg
ccgcagtggcggttcggtccgcgcggtggccagcagcacccggaccggctcgtgctcgac
ctggacccgggtgagggggtcggcctgcccgagtgcgtcgaggtcgcggtcgccgcccgt
gagctcctgcagggcatgggcctcgacccccacccggtgacgtccggctcgaagggcatc
cacctgtacgcggcgctggacggacggtccgccgcgcagcacgtctccgaggtcgcgcac
gagctcgcgagggcgctcgagcaggacctgcccgacctggtgctgtcgtcgatgagccgc
gcggagcgcgccggcaaggtcttcgtcgactggtcgcagaacaacggcaacaagacgacg
atcgcgccgtactcgctgcgcggccgggaccggccgacggtcgccgcaccgcgtacctgg
gacgagctcacgtcgcgcggactcgcccagctcaccctggacgaggtgctcgaccgcctg
gaggagcgtggggaccgcctgcacccggtcgcgtccgcctcgctgtcggtcgggaggccc
gactcgggtcactgggacggcgaccggacccagcgtgcgaacgacgcggagcagccgggt
cgcgaccgcctcgccgcgtaccgcgcgaaacgggacgcctcgaggacgccggagccggtc
cccgagggcgcgccgacggtccggaaggacggcacaccgacgttcgtggtccaggagcac
cacgcgacccgggaccactacgacttccggctcgagcacgacggggtgctcgtcagctgg
gcgctcccgaagggcgagccgaccgacccggggaagaaccacctcgcggtgcagaccgag
gaccacccgctcgagtacggcggcttcgagggcacgatcccgcacggcgagtacggcgcc
ggcacggtcacgatctgggacgacggcacctacgaactcgagaagtggcgggagggcgag
gaggtcatcgtcaccctgcacggacggacgaacggcaaccggcgactggcgctcctgcac
acccgcggccgcggtcgcgggaaggacggcgacgagaagaactggttgatccaccggacg
aaggagcagccgtcgcggacgcccgacgagggcggggccgcgccgagcaggggctcgggc
tcgggcgcagcgtcggacggggctggggcgaccacgccgaccgagcggcgcccgatgctc
gcgtcgccggtgtcgggcacgccgtcgttcgaccccgacgcgtgggcgttcgagatgaag
tgggacggcgtccgggcactcgccaccgtgcgggacggcgccgtgacgctccgcagccgg
aacggcaacgacctgaccgcgcagtaccccgaactccaggagctcgccgaccgggccggg
gtcgacggggtgttcgacggcgaggtcgtggcgctcgacgaggcgggccgcccgtcgttc
cagcggctgcaggaccggatgggactgacgcggaagcgcgaggtcgacgcggcgcaggcg
accacgcccgtgcgcttcctgctcttcgacgtcctcgaggccgacgggcacgacctcgtc
cggctcggctacgacgcccgccgggacgccctggcgacggtcgtggaccccggcggtgcg
atcgaggtgccgccggcgttcgacggggacttcgacgcggccgtcgcggagtccgcccgg
ctgcggctcgagggggtcgtggccaagaagcggcgctcgcggtacaccgagggccgccgg
tccgagtcgtgggtgaaggtcaagcacctcgccgcgcaggaggtcgtcgtcggcggctgg
aagcccggggccggtcgtcgcgcgggcgggatcggctcgctgctgctcggggtccccggg
ccggacggactcgagtacgtcggcaaggtgggcaccgggttccgcgaccgcgacctcgac
gagatcgccgacgtgctccgctcccgggcccggaagacctccccgttcgtcgacgtcccc
cgaccggacgcccgggacgcacactgggtccgcgccgaccgggtcggcgaggtcgtgttc
gccgagtggacggcggacgggcggctgcgccagccgtcgtggcgagggtggcggccggac
aaggacccggacgacgtcgtccgcgaggccggacccgacacgtga
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