Corynebacterium crudilactis: ccrud_05565
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Entry
ccrud_05565 CDS
T04829
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccjz
Corynebacterium crudilactis
Pathway
ccjz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccjz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ccrud_05565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccjz03019
]
ccrud_05565
03009 Ribosome biogenesis [BR:
ccjz03009
]
ccrud_05565
Enzymes [BR:
ccjz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ccrud_05565
Messenger RNA biogenesis [BR:
ccjz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ccrud_05565
Ribosome biogenesis [BR:
ccjz03009
]
Prokaryotic type
rRNA helicases
ccrud_05565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
ANE03728
UniProt:
A0A172QSV6
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All DBs
Position
1169060..1171273
Genome browser
AA seq
737 aa
AA seq
DB search
MSNTENVNGDVEQPDNVILSESQETPQGDSASADFALETPSNEGSEEITRDADTSEDADS
ADADNASNVINENEDSSEGANQPSTESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPI
QAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRIDKSVRSPQALVLAPTRELALQVAD
SFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLQKGSLDISGLRF
LVLDEADEMLNMGFQEDVERILEDTPENKQVALFSATMPNGIRRLSKQYLNNPAEITVKS
ETRTNTNITQRFISVAHRNKMDALTRILEVTEFEAIIMFVRTKHETEEVAEKLRARGFSA
AAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVVNYDIPNDTESYVHR
IGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPLNEMELPTVDQVNEFRKVKFAGSIT
KSLENKQMDMFRTLVKEYSEANDVPLEDVAAALATQAHTGDFLLKELPPERRERSDRRRD
FDDRGDRGGRGRDRDRGDRGDRGDRGSRFDRDDENLATYRLAVGKRQHIRPGAIVGALAN
EGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLSDTRISGQLINIERDAGGRPPRRFE
RDDRGGRGREDRDGGDRGGRGGFRGDRDRGGDRGGRGGFRGGREDRGGDRGGRGGFRGDR
DRGGDRGGRGGFRGGRD
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataccgagaacgtcaacggcgacgtagaacagccggataacgtaattttgtcg
gaatctcaggaaaccccgcagggtgactcagcatcagctgacttcgctctcgagacccca
tccaatgagggtagcgaagagatcaccagggacgcggatacttctgaggacgccgactct
gcagatgcagacaacgcgagcaatgtaatcaatgagaatgaggactcctcggaaggcgct
aaccagccttcaaccgagtcatcctctacggaagccaagtccggcttcgatgcactcgga
ctgccagagcgtgttcttgacgctgtgcgcaaggtgggttacgaaactccttcccctatt
caggcacaaactatcccaatcctcatggagggtcaggatgttgttggtctagcacagacc
ggtaccggtaagaccgcagctttcgcgctgccaattctttcccgtattgacaagtccgtg
cgcagcccacaggcacttgtgcttgcccctacccgtgagctggcacttcaggttgctgac
tccttccaatctttcgctgaccacgtcggtggcctgaacgttctgccaatctatggtgga
caggcttacggcattcagctttccggtctgcgccgtggcgctcacatcgttgtgggtacc
ccaggtcgtatcattgatcacctgcagaagggctcactggatatttccggtctgcgcttc
ctcgtgctcgatgaggctgatgagatgctgaacatgggcttccaggaagacgtcgagcgt
atcctcgaggacaccccagagaacaagcaggttgcactgttctccgcaaccatgccaaac
ggcattcgtcgcctttccaagcagtacctaaacaaccctgctgaaatcaccgttaagtcc
gaaaccaggactaacaccaacatcacccagcgtttcatctccgttgcacaccgcaacaaa
atggatgcgcttacccgcatcctcgaggtaaccgagttcgaagcaatcatcatgttcgtg
cgcaccaagcacgaaactgaagaagttgctgagaagcttcgtgcacgcggattctccgca
gcagctatcaatggtgacattgctcaggcacagcgtgagcgcaccgtcgaccagctcaag
gatggccgcctggacatcctcgttgcgactgacgttgcagcacgtggcctggacgttgag
cgtatttcccacgtggttaactacgacattccaaatgacaccgagtcttacgttcaccgc
attggccgtaccggccgtgcaggacgtaccggcgaggcaatcttgtttgtcaccccacgt
gagcgtcgtatgctccgttccatcgagcgtgcaaccaacgcaccgctcaacgagatggaa
ctgcctaccgttgatcaggtcaacgaattccgcaaggttaagttcgctggctccatcacc
aagtctcttgagaacaagcagatggatatgttccgcaccttggtgaaggaatactccgaa
gctaatgatgttcctctcgaggacgttgcagctgcacttgcaactcaggcacacaccggc
gacttcctgctcaaggagctcccaccagagcgccgtgagcgcagcgatcgccgtcgtgac
ttcgatgatcgtggcgaccgcggtggacgtggacgtgaccgtgatcgtggcgaccgcgga
gatcgtggagatcgtggctcccgcttcgatcgcgatgatgagaacctggcaacctaccgc
ctcgcagtgggcaagcgccagcacatccgcccaggtgcaatcgttggtgcacttgctaac
gaaggtggcttgaactccaaggacttcggacgcatcaccattgcagccgatcacaccctt
gttgaactgccaaaggacctcccacagagcgttcttgacaacctgagcgacactcgtatc
tccggtcagctgatcaacattgagcgcgatgcaggtggacgcccaccacgtcgcttcgag
cgcgatgatcgtggtggacgcggacgcgaagaccgtgatggtggcgatcgtggtggacgc
ggtggattccgcggagaccgtgaccgcggtggcgatcgtggaggccgtggaggcttccgc
ggtggacgcgaagaccgtggcggcgatcgtggtggacgcggtggattccgcggagaccgt
gaccgcggtggcgatcgtggaggccgtggaggcttccgcggtggacgcgactag
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