Acetivibrio clariflavus: Clocl_0325
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Entry
Clocl_0325 CDS
T01661
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccl
Acetivibrio clariflavus
Pathway
ccl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clocl_0325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccl03400
]
Clocl_0325
Enzymes [BR:
ccl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clocl_0325
DNA repair and recombination proteins [BR:
ccl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clocl_0325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AEV67066
UniProt:
G8M1Y3
LinkDB
All DBs
Position
347967..351500
Genome browser
AA seq
1177 aa
AA seq
DB search
MDSIKTKDYIIEPLLESKDYKNIIENITKEFHISINGPSESQRAHISYAICSHLNSKGIF
IAYNDLQARKIYEDFSYFFDKDVILFSSKEIMLHDVEAKSYDAVYDRITALDRILKSDYR
FIVISAEAICQKLIDRELFKSSCLNFDQDSRIDLTFLIHKLVSIGYERVTTVEGKGQFAV
RGGIIDIFPVNSENAYRIELFDDEIDSIRTFDVLSQRSVERAESIEILPAREMLYDRSEL
DGIISRIQSALAAQKEKIDKNAQQDYLIKLDEKISNDIEKFKENFYFPGMDKYIPYIIQR
PALITDYIAEENIIVFIDEPKRFQQRIENILNENAEMCKSLLEKGQLLPGCFDLYFEFDY
IWRRLYEKKSVCFNTIMTDEVLLAESRKLSIASRLLNSYQGNFDLMVEDIKYWKKSNFRV
LILAGTRSRGEMLEETLKNKEIEAVYIDEIKEDILPGQVIITHGSLSKGFEYPDAEFVVI
SGKELFGQDRKLKRQAVKKVKGKKINVFTDLSIGDFVVHQFHGIGKYIGIEQLTVENIKK
DYLKIQYQDGAYLYVPTSQLDLIQKYIGSEGKTPKLSKLGGTDWLKTKAKTKESIMELAG
ELIKLYAMRESSKGHAFGKDTIWQKQFEEQFPYQETEDQLRCIEEIKRDMESDKPMDRLL
CGDVGYGKTEVAIRAIFKAVMDGKQVAYLVPTTVLAQQHYNNFKERMKDFPVKVEMVSRF
RTPAEQKRILRDVKAGLVDVLIGTHRLLQKDVVFKDLGLLVIDEEQRFGVMHKEKLKKLR
ANVDVLTLTATPIPRTLHMSLIGIKDISTIEDPPEERYPVQTYVMEYNEEVIKEAINREM
ARNGQVFYLYNRVRSINVKAAEIKKMVPDARIAVAHGQMDETELEDIMFRFINGEYDILV
CTVIIESGIDMPNVNTIIVEDSDKMGLSQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIA
EKRLQAIKEFTEFGSGFKIAMRDMQIRGAGNLLGAQQHGHIDSVGYDMYCRLLAEAISEL
KGQSVQEEVEVSIDVNVSAYIDSSYISSENEKIEMYKKIASVQDEQDVLDVEDELMDRYG
NIPTPVSNLMKIAHIKALALKCGFSSVQEKNGSIIFQYIDSKYVNFEVIGKIMEKHRRKL
LFNASNKPYITYRITDIKRESLLDNITILLQDINKLK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatagtataaaaaccaaggactacataattgaaccacttcttgagtcgaaagattac
aaaaatatcattgaaaatataactaaagaatttcatatatccataaatggcccttctgaa
agccaaagggctcatatttcctatgctatttgcagccatttgaacagtaaaggtatattt
attgcatataatgatcttcaggccagaaaaatatatgaagatttttcatatttctttgac
aaggatgtaattctattttcctcaaaggaaattatgcttcacgatgttgaagctaaaagt
tatgatgctgtctatgataggataacagcattagacagaattttgaaaagcgattacagg
tttatcgttattagtgctgaagctatatgccagaaattaatcgaccgagagctttttaaa
tccagttgtttaaattttgatcaagatagcagaatagacttaacttttcttattcataag
ctggtatcaataggctacgaaagagttaccactgttgagggcaaaggtcagtttgctgtc
agaggcggaataatagacattttccctgttaatagcgaaaatgcatatcgtatcgaattg
tttgacgatgaaattgactctataagaacctttgacgtgctttcccagagatctgtggaa
agagctgaaagtatcgaaattttgccggcaagggaaatgttgtacgaccgctcggaactt
gatggaataatctccaggatacaaagtgccttggctgcgcaaaaggaaaagatagataaa
aacgcccagcaggattatttaataaaacttgatgaaaaaataagcaatgacattgaaaaa
tttaaagagaatttttactttccgggaatggacaaatatattccctacattattcaaaga
cctgccttgataaccgactatatagctgaagaaaatatcattgtttttattgacgagcct
aaaaggtttcagcagagaattgaaaatattcttaacgaaaatgcggaaatgtgtaaaagc
cttttggaaaaaggacagcttcttcccgggtgttttgacctttattttgaatttgactat
atatggagaagactttatgagaagaaatctgtctgcttcaacactattatgaccgatgaa
gtacttttggcagaaagcagaaaattaagtattgcttcaaggttattgaattcctatcag
ggaaattttgacctgatggtagaggatataaagtactggaaaaaaagtaacttccgggta
ctgattttggccgggaccagaagcagaggcgaaatgcttgaggagacgcttaagaataaa
gaaattgaagcggtttatattgatgaaatcaaagaagacattttgccgggacaggttata
ataacccatggaagtctaagtaaaggttttgagtatccagatgctgagttcgttgtaatc
agcggaaaagaacttttcggacaggacaggaagcttaaaaggcaggcagtaaaaaaagtc
aaaggcaaaaaaataaatgtatttaccgatttgagtattggagattttgtagttcatcaa
ttccatggtatcggaaagtatatcggaattgagcagttgactgtagaaaatattaagaag
gactatttgaagattcaatatcaggatggggcttatttatatgtacccacaagccagctg
gacctaatacagaaatatataggttccgagggaaagacacctaaactgagcaaacttggc
ggaaccgactggctgaaaacaaaagcaaagacaaaagaatccatcatggaactggcagga
gaacttataaaattatatgccatgagagagtcatcaaaggggcatgcctttggaaaggat
acaatatggcaaaagcaatttgaagagcagttcccttaccaggaaacagaggatcaactt
cggtgcatagaagaaattaagcgggatatggaatcggataaacctatggataggttattg
tgcggagatgttggatacggaaagacagaagttgcaattagagccatatttaaagcggta
atggatggaaaacaggtggcgtatcttgtaccgacaacggtattggctcagcagcattat
aataatttcaaggaacgcatgaaggatttccctgttaaggttgagatggtaagccgtttt
agaactccggcggaacaaaagcgtattttgagagatgtcaaagcagggcttgttgatgta
ttgattggaactcaccggctcttgcaaaaagatgtggtatttaaggatttaggactgttg
gtaatagatgaagagcagcgttttggagtcatgcataaggaaaaattaaaaaaactgcgg
gcaaatgttgatgttcttacattaaccgctacgcctattccaagaactcttcatatgtcc
ctgatagggataaaagatattagtaccatagaggacccaccggaggaaagatatccggta
cagacttatgtcatggagtataatgaggaggttataaaagaagccattaacagagaaatg
gcacgcaacggtcaggttttttacctgtacaaccgtgtaaggtcaattaatgtaaaggca
gcagagattaaaaaaatggtgcctgacgctagaattgcagtagcccatggacagatggat
gaaacggaactggaagatataatgttccgatttataaacggtgagtatgatattcttgta
tgtacggtaattattgaatcgggaattgatatgccgaatgtaaatacaatcatagttgaa
gattcggataaaatgggactatcccagctttatcagctaaggggaagagttgggagatca
aatagaatggcttatgcctatattacttataaaaaagataaagtactttctgaaattgcg
gaaaaacgcctgcaggcaattaaagagtttaccgagttcggttcgggttttaaaattgct
atgagagatatgcagataaggggcgcaggaaatcttttgggtgcgcagcagcatggacat
atcgattctgtgggatatgacatgtactgcagattattggctgaagcgataagcgagtta
aaagggcagtcggttcaggaagaagttgaagtttctattgatgtaaatgtaagtgcttat
attgacagcagttatattagctcggagaatgaaaaaatagaaatgtataaaaaaatagca
tccgtgcaggatgaacaggacgttttggatgttgaagacgaacttatggaccgatatggc
aacattccgactcctgtgtcaaaccttatgaaaattgctcatattaaggctttggcttta
aaatgcgggttttcttcggttcaggaaaagaatggttctataatatttcaatatatagat
agcaaatatgtcaattttgaagtaatcggaaagattatggaaaaacacaggcggaagctt
ttgtttaatgccagcaacaaaccttatattacgtatagaataactgacattaaaagagaa
agtttacttgacaatattacgattttattacaggacattaataaattgaagtag
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