Coregonus clupeaformis (lake whitefish): 121533664
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Entry
121533664 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121533664
03015 mRNA surveillance pathway
121533664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121533664
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121533664
5.6.2.5 RNA 5'-3' helicase
121533664
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121533664
mRNA cycle factors
Common to processing body (P body) and stress granule
121533664
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121533664
NCBI-ProteinID:
XP_045061284
LinkDB
All DBs
Position
20:complement(18104386..18121797)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PDEGLHNGGVNDVAKASQLLSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEITHNYQVDFVWKSTSFDRMQSSLKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFN
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSTGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVMPPMPPPGYLAQANGPAAGRGGALKGKAGRGGRQRTRGMGNHGSSG
QANGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctgatgaggggcttcacaatggaggggtcaatgatgttgccaaggcaagccaactcctc
tctgagttgaactttgaggaggatgaagaggacacctattacaccaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgctgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgttgattcaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcagctccgggcccgccagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatcccacggccactctggaggatctg
gagaagcccggcgtcgacgaggagcctcagcatgtgttgctgcgctacgaggatgcctac
cagtaccagaacatctttggccccctcgtcaaactggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggcccccctatggaagggcatcgggcac
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaataacccacaactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagttccctgaagacctttgctgtggacgag
acgtctgtgtcaggctacatctaccataagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgcccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaactgtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcgggtctgaaggtggtcaggctgtgtgctaagagcagagaggccatcgactcc
cccgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctg
cagaagctgcagcagctgaaggatgagactggggagctgtcgtctgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagcgagagcttctcatgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagacccccgcctggccaagatgcagttccgctcaatcctc
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggggcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaaaaag
gcagccaaggcgggcctgtcccagtctctgtttgagcgtctggttgtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggccctcagcgccttcccctccaac
atcttctatgagggctccctgcagaacggcgtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatcgctagctctggaacgtcctacctgaacagaactgaggcggccaatgtggag
aagatcaccaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggctccctccac
acaaagctctatcaggaggttgagatcgccagcgtggatgcgttccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttccttaat
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcaac
aggccccgcaagctggtcaacgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgcgaggccctcatccctgggtctgcctacgatcgcagcagcacagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattggggctgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttagtgatgccccccatgcctccg
ccaggctacctagcccaggccaacggccctgctgcaggtcgtggtggggcactgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtagcagcggg
caggccaacgggcccaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggcgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactag
DBGET
integrated database retrieval system
