Coregonus clupeaformis (lake whitefish): 121535061
Help
Entry
121535061 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121535061
03015 mRNA surveillance pathway
121535061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121535061
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121535061
5.6.2.5 RNA 5'-3' helicase
121535061
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121535061
mRNA cycle factors
Common to processing body (P body) and stress granule
121535061
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121535061
NCBI-ProteinID:
XP_041697686
LinkDB
All DBs
Position
21:21007236..21017230
Genome browser
AA seq
1099 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEESELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDPVVKASQLLADLNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRNSTGRTSNMYFQTHDQIGMIGPGPMASMNIPI
PFNLVMPPPGYMGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMGNNGGGSGQHGHMSGS
QASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGVTGLSQY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcatacgggccgagctcgcagactctcacgttcctggacactgaggaa
tcggagttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccaaacgcagagtcagttggacaaccaggtgaatgggcct
gatggagttctgcagaatggggaagaccctgttgtaaaagcaagtcaactccttgcagat
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgcggcaatacgtctggcagtcacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgcttgag
tgctacaactgcggctgtcgcaacgtcttcctcctgggctttatccccgccaaagcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcggagcaggagcagcttcgggcccgccagatcaccgcccagcagatc
aataagctggaggagctctggaaggaaaaccccacggccactctggaggaccttgagaag
cccggcgtggacgaggagcctcagcacgtgctgctgcgctacgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggctgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atttgcctgaggtacaagggagatcttgccccgctctggaagggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccatcgagctgaggagcagtgctggggct
cccgtggaagtaccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcagagtgccctgaaaacctttgcagtggacgagacctctgtgtctgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcactgggaaaactgtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacattgcggtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccattgactcccctgtgtccttcctggctctt
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccttgaagcgcacc
gccgagagggaactactcatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgaatgcatggtgcctgtcatacttggggccaaacagctgatcctagtggga
gaccattgccagctgggtccagtagtgatgtgtaagaaggcagccaaggcaggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccagccctcagtgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaaacccatgttcttctacgtgacccagggccaggaggaaatcgcaagctctgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctc
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagcggtcc
tacctggtgcagtacatgcagtttagtggctccctccacaccaagctctaccaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgacgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagagagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgccagggaggctctt
attcctggatctgtgtatgaccgcaacagcactggacgtacatccaacatgtacttccag
acccacgaccagattggcatgattggtccaggccccatggcctccatgaacatccccatc
cccttcaacctggtcatgcccccgccaggctacatgggccaggtcaacggcccccaagca
ggccgtggcggaggtatgaagggtaaggcgggcggaggggcacgaggcgggcgccagagg
agccgtggtatggggaacaatggcgggggcagtgggcagcacggccacatgagtggcagc
caggccagccaggacctgggctcccagcccttctcccagggacccctcacccagggctac
atcaccatgagccagccctcccagatgagccagcctggcctgtctcagcctgaactctcc
caggacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcccaagac
tccacctaccagggggaaagagcctatcaacatggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
