Coregonus clupeaformis (lake whitefish): 121535369
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Entry
121535369 CDS
T08357
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121535369
09122 Translation
03013 Nucleocytoplasmic transport
121535369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121535369
03041 Spliceosome [BR:
cclu03041
]
121535369
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121535369
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121535369
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121535369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
121535369
NCBI-ProteinID:
XP_041698318
LinkDB
All DBs
Position
21:complement(52593452..52611189)
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AA seq
657 aa
AA seq
DB search
MSVLTLFNFNDAKDTFTASTRSALDNKTSKPLLNAFNQITGNDTEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQKPTEEKEDGMEVEEGEMGDEEPSAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCILNDDQCSWMEETT
KVVYQLLREIPPDGDKFAAMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPMRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHNNMAACQSDSREFMPTLEEFFEEAIEQADPA
NMVENEYKVVCNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDYEDNGDTLLKESNDSPSMQTKLVSNQQMDDIAAKLGAQWKTLAGQLDIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVPALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgactttattcaatttcaacgatgcaaaagatacatttacagcctcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgttaaacgcattcaaccagatcact
ggaaatgatacagagaagaagaccacccttgaccaagctctgaggcaggtcctggaggag
cagattgtggaaaagaaagcactcgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccaccactcctttcctactgttgggagatgtt
ctggactgtcttcctctggaccagtgtgataagatcttctcctttgttgaagagaatgtc
tccacctggaagtctaactcattttacactgctgggaagaactacttgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtggacggatccag
ctgttcctggctcgtctctttcccctgtctgagaaatcaggtctgaacctgcagagccag
tttaatctcgacaacatcacagtattcaacaaaaatgagcaagagagcactcttggccag
aagcccacagaggagaaagaggatgggatggaagtggaggagggggagatgggagatgag
gaacctagtgcacctgctccatgttccatccctatcgactacaacctatacagaaagttc
tggactctgcaggactacttcagaaaccctgttcagtgttatgacaagttctcctggatg
actttcctcaagtattcagacgagacgctggcagtgtttaaaagcttcaagctggacgac
atgcaggcttctaaaaggaagctggaggagctgaggacggcaggaggagaccacgtttac
tttgccaagttcctcaccagcgagaagttgatggacctgcagctcagtgacagtaatttc
agacgacacatcctcctgcagtaccttatcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgatcagtgttcatggatggaggagaccacc
aaagttgtgtaccagcttctcagagagatcccaccggatggagacaagtttgccgccatg
gtcgagcatgtcctaaacacagaggagaactggaactcgtggaaaaatgagggatgccca
agctttgtgaaggacagaccagtagatgacaaacccaagagacccatgaggaagagacaa
gctccagaagacttcctaggtaaaggccctgacaggaaggttttcatggggaatgatgaa
ctcacgagactgtggaatctgaaccacaacaatatggcagcttgccagtcagatagcagg
gagttcatgcctactctggaggagttctttgaagaggccattgaacaagctgacccagcc
aacatggtggaaaacgagtacaaggtggtgtgtaactcaaactatggctggcgagccctg
cgtctgttgtctaggaggagtccccacttcttccagcccaccaaccagcagttcaagagc
ctggccgactacctggagagcatggtcatcaaactggccaaggagctgccgaaggacctc
ccttctgaggagataaagacaggagaggaagactatgaagacaacggcgacacccttctc
aaagagagcaacgacagtccgagcatgcagaccaagctggtgtctaaccagcagatggat
gacatagcagccaagctgggtgcccagtggaagaccctggctggccagctggatataaaa
gcagcggagatccgggagattgagacagacagcgaggacgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgtgaggggacacaggccaccgtcgagagccttgttcca
gcactcaatgctgctggcttccccaagatcgcagacatcctgaacgagacatag
DBGET
integrated database retrieval system
