Coregonus clupeaformis (lake whitefish): 121536617
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Entry
121536617 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121536617
03015 mRNA surveillance pathway
121536617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121536617
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121536617
mRNA cycle factors
P-body specific factors
121536617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
121536617
NCBI-ProteinID:
XP_041699954
LinkDB
All DBs
Position
23:9816342..9843352
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AA seq
490 aa
AA seq
DB search
MRSEKDQMPGGREKSVVEIQLRDIPREQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEDKRKRREEER
RKRKEADKVKKLSEKEIKIKLLKKSDRDDDVDSDKLKDKGDSGDTERAKWDKPSGHMKFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHFEFDKFMRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPGTGDKVGKEDREGIGASRKDRTRNKVSDKARVSQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCMGSASKGYELPVRQSPEHIAAERCYEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcggtctgaaaaggaccaaatgcccggaggcagggagaaaagtgtcgtcgagatacaa
cttagagacattccgagggaacaggacgccgtctctgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactacttcgagttcttccctgct
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtctccaagaagaaactcaaa
aagaaagatgccaaagctggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagatc
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggaaaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaggacaaaaggaagcggagggaggaggagaga
cgcaagcgcaaggaggcagataaagtgaagaaactgtcggagaaggagatcaagatcaag
ctcctaaagaagagtgaccgggacgatgacgtggactctgacaagctcaaggacaaaggg
gacagtggggatacagagagggccaagtgggacaaacccagtggacacatgaagttcaag
gaagccaaggacaagggtcagatggagagcgataagggagaacatggccgcaggcagaga
gacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactttgagttt
gacaagttcatgcggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgg
gccaagaaagatggccaccaccacggctcctattcctactgccctggcacgggcgacaag
gtgggcaaggaggacagggagggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggctcgtgtctctcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggctctgccaaacaaggaccgaccggccatg
cagctctaccagcctggcactcgcaaatgcatgggctcggcgagcaaaggttacgagctc
cccgtccgccagtcgccagaacacattgccgcggagcgctgctacgaggccatcgccatg
ggaacaggctcggagaagagcagcgaagattag
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