Coregonus clupeaformis (lake whitefish): 121536673
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Entry
121536673 CDS
T08357
Name
(RefSeq) chondroitin sulfate synthase 2-like
KO
K00747
chondroitin polymerizing factor [EC:
2.4.1.175
2.4.1.226
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
cclu01100
Metabolic pathways
Module
cclu_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
121536673
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cclu01003
]
121536673
Enzymes [BR:
cclu01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
121536673
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
121536673
Glycosyltransferases [BR:
cclu01003
]
Glycan extension
O-Glycan
121536673
BRITE hierarchy
Motif
Pfam:
CHGN
Fringe
Motif
Other DBs
NCBI-GeneID:
121536673
NCBI-ProteinID:
XP_041700032
LinkDB
All DBs
Position
23:complement(17181944..17200458)
Genome browser
AA seq
765 aa
AA seq
DB search
MRFAMFISLLRPIGPVIIGVSLGFTLSLLSVNWVEESCVLDGKASEEIRLAQDGNSKGAR
RPNSISTVDVDAEEDFEPRIVPYKPVQQSQTKKLFRAKYISTELGIRERLFVGILTSKNT
INTLGVAVNRTISHHLDALVFFTGMRNRKVPHGMFVVTHGDERLIWNMFQTIKYILEHYI
NEYDWFYLAQDDTYTEADRIKQLVAHLSMDRELYMGSPEEFIGGEMEGRYCYGGFGYLLS
RTLLLRLKPFLENCRNDILSARPDEWLGRCIIDYVNTNCVDEHEGLQYYRYEMGKNSDPS
KVENVQFKNALTVHPVSDPEQMYRLHKHFTELELQRTYDEIEKLQAEIKNVSKVAFAGNR
SSQWPIGINPPFEPKSRFEVLRWDYFTEEQVYSCIDGSPKCELRGIDRLDVAAIIEIAMG
ELNKKYKPVLHLKKQQLINGYRRFDPTRGMEYTLDLQLEVVNQKGRSRSITKRVHLVRPL
SRIEIIPMPYVTEATRVHIILPLTFQDRGAVNHFLEVFAANLFETSENAILTLLFIYDPF
EAQQVNQNDIFSSVKAQINAYERKYPAVKILWISVKTETPSQIKFMDIISKKHPVDTLFF
ITNVNTNINSEFLNRCRMNSINNWQVFFPIHFQDYNPDIAFHNQEPPPTVDLVKDAGHFD
RSSFEEACFYNSDYMVTRTRMASDVQENEEILETLDIYDMFVKYSTLHVFRAVEPALHQK
YRYQACNPQLSEDIYHRCVQSNLDGLGSRSQLAMLLFEQEQGNST
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgcaatgtttatttctttgctgaggccgatcgggccggttattatcggtgtt
tctttgggatttaccttaagtttacttagtgtgaattgggtagaggaatcttgtgtcctc
gacgggaaagcaagtgaagaaatacgtttggcccaagatgggaattcaaaaggagcgagg
agaccaaattcgatatcgacggtggatgtggatgccgaggaagattttgagccaagaata
gtgccatataaaccagtccaacaaagccaaacaaagaaactttttcgggctaagtacatc
agtacagaactggggatccgggagcgcctctttgtagggatcctgacatccaaaaacacc
atcaacacactgggagtggccgtgaaccgcaccatcagccaccacctggacgccctggtc
ttcttcaccggcatgcgcaaccgcaaagtgccccacggcatgttcgtggtcacccatggg
gacgagaggctcatttggaacatgttccagaccatcaagtacatcttagagcactatatc
aatgagtatgactggttctatctagcccaggacgacacctatacggaggcagacaggatc
aaacagctggtggctcacctgagcatggaccgggagctttacatgggaagtcctgaggag
tttataggtggggagatggaggggaggtactgctatggtgggttcggatacctcctgtcc
cgtaccctgctgctccggctcaaacccttcctggagaactgtaggaatgacatcctgagt
gccaggcctgacgaatggctgggcagatgcatcattgattatgtcaacacaaactgtgtg
gatgagcatgaggggctgcagtactaccgttacgagatgggcaagaactcagatccgagt
aaggtggagaatgtgcagtttaagaatgccttgactgtccacccggtgtctgaccctgag
cagatgtacagactacacaaacacttcactgaactcgaacttcagaggacatacgatgag
atcgagaagctgcaggcagagataaagaatgtgagcaaagtggcttttgctggcaaccgg
agctcccagtggcccattgggatcaatcctccgtttgagcctaagtctcgttttgaggtc
ctccgatgggactacttcacagaggagcaagtgtattcatgcattgacggctcccccaag
tgtgaactgcgtggcattgatcggttggacgtggccgccatcatcgagatagccatgggg
gagctgaacaagaagtacaagcctgtcctccacctgaagaagcagcagctgatcaacggc
taccggcgctttgaccccactcggggcatggagtacaccctggacctgcagctggaggta
gtcaaccagaaaggccgcagtcgctccatcaccaagagggtccacctggtgcgtcctctg
agtcgcatcgagatcatccccatgccttacgtcacagaggccaccagggttcatatcatc
ttaccactgacctttcaggatcggggcgccgtcaaccattttcttgaagtgtttgctgca
aatttgtttgagaccagtgaaaacgccatcttgactttactgtttatctacgacccattc
gaggcccagcaggtcaaccagaatgacatattctccagtgttaaagcccagatcaatgcc
tacgaacgcaagtatccggcagtgaagatcctgtggataagtgtcaagaccgaaacccct
tctcaaatcaaattcatggacatcatctccaagaagcacccagtagacacgctgttcttc
atcacgaacgtcaacaccaacatcaactcagagttcctcaaccgttgccgcatgaactct
atcaacaactggcaggtattcttcccaatccacttccaggactacaacccagacatcgcc
ttccacaaccaggagcccccacccacagtagacctggtcaaggatgccggacactttgac
cgcagttcttttgaggaggcgtgcttctacaactctgactatatggtgacgcgcacacgc
atggcctccgacgtgcaggagaacgaggagatcctggagaccttggatatctacgacatg
tttgtcaagtactccaccttgcatgtgttcagggctgtggagccggctctgcaccagaag
taccgctaccaggcctgtaacccgcagcttagtgaggacatctaccacaggtgtgtccag
agcaacctggatggcctgggatcccgttcccagctcgccatgctgttatttgaacaagag
caaggaaatagcacttga
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