Coregonus clupeaformis (lake whitefish): 121542662
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Entry
121542662 CDS
T08357
Name
(RefSeq) protein virilizer homolog isoform X1
KO
K22910
protein virilizer
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542662
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
121542662
BRITE hierarchy
Motif
Pfam:
VIR_N
Motif
Other DBs
NCBI-GeneID:
121542662
NCBI-ProteinID:
XP_041708075
LinkDB
All DBs
Position
28:7379526..7397365
Genome browser
AA seq
1805 aa
AA seq
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MAGDTLTELLFLDTFKHQSAELTNVDVVRFPCGVLITEVRVIPPGIKAHTSLPDNRAFGE
TSPHSFQLELFFNNLTKPSNACFHRLGSFEYDENKSIIFRPNGKVNTDGLVLRGWYTSLT
VAVYGTAERSHGHDRDSPPPPPPPPPQQQTGLKRIVKQEWDKEEQYNGSPPRPAPRGPRT
PPGPPPPDDDDEEPVPVTVGVSKAEPTERGEDYLEAVSPERGSLPADEPYSDAEPEEEGE
EEEDEEPEEEDDARTECSAPEDEEEEEEEDEGEEEEEEGDDGYEQISSDEDDLDNGSFKV
PSFDIDYTPEDLASVPPVQYDPYERELRPLLYFTPPYKTRFDSQLERARGAVCCGPEGPG
GGEGAEAEVVAQMRELLAGIGVDRDSRWVTALEQASGLLARGLGFLIAQGEWEEPIGALV
QWALQGLSMEIALTQPIALNLRQLKAGAKLASCLAECPQGLTALLHEGALELLLELLQVD
HVSSTLKLCILRALDALTSAPAGVEAFLQEGEMERSGYQRLVQLFLGEETVRVVTAGNSI
LQKGHAYEVMTDLQRTAAAWSEPLQDEGEEPDIPMEEEPSLGHSPVSEAELDRLAGVLEE
LHHLLETAPHTMVQPPGKAFPTTTRITGPQERDDPYPTLYRYMHACHFLESTAVALSAAV
ATGHTGVTHAVRELLHFLSLTQSGLLFMLAQPTPTNLLLRLLATVAEAEGEEPMVIGGDG
GFLGPGLGEEGLGVWLMQALHALQSVSELMSHVTAGGEGGVGLEEGDSAEVLSMLHALYL
ITFTQTGRSAVAHVFSLENNLSCLVTLLQHHSKDGHGEAKARKAVTYNYACMLVLMVVQN
SSDLRTMEQHAVPLLILAKADDTNAKLQELSQWLEPLDKVKLEMGSIPSLIDYIKQNVEN
VLTLEGSGLMSALRALCQIACPPPAVEGQQRDLKWSLAGVQLFSGEGLDMCVCVLQKLCS
VLLPAWRVHGHMGPTPQRCMILGMCANTLRLLRTMLTELLRSGAFQFRDTRVASTLVTLH
MVVCSAPASGRLDWEETKVQALIVDVLLTFTQGVSEQMTHTEETLLSNTWSLMLKEVLGS
LLKAPEGLFSGLTLLSELLPLPLPMQSTQVISVQDVAVALNTRKLWSMHLRVQWGMFADA
LGCVCGTSCPPLLAMLRRVCVQLADLSSPTATLIMKTLLELLLGEVQPVEGKSPGWGQVL
RLLSLFDTLVSQRACKITTLHLLSGSAPGDEPLTDVFPLLLSLLVPSADHALPQQHCAEL
VGSVLQSLCDQDISLVVPHPAEGCVSEAEQLANALPGREMISSVCDSLLEVLGNGESSAT
LLLTCLRTLMFLTEHDYGLYHLKGALKKHSASVCALLKRQVFSFRKDSAELLSALLDFLR
QILNTDPLGCCGEESGGEESVLVPPPRSVALTGSEMKALLQWEETDTHPLNTLEKHITKL
CKEEDSLETLLENVIGLRQTLETTMDASSPPETEPTLPNPDTLLAQFNHRTVFVLSEVLD
EQLKALWFSPFHTDDMEAELDMVKVDLLGLAQECCPELDLKSELERSFLSEPLSPSHTKT
NKGFRLGKHKHETFITSGKSDYIEPAKRAHMMAAPRGRGRGGFGGQLCRPHDIFRQRKQN
TSRPPSMHVDDFVAAEFKDVGTPLGLLPPKRPPKSSPKPPTRGLFTGNRGRAAFHSQQTR
FFTPPQPKGVLLSGNYNARREGGRGGSSWSGPLPPVTHRGTYSDARGGQSNFTRGPLPSR
QQPAGAYRLAPRDRAPRGRGGTGLSWLSQGGGGGGGGGRGSQGGKFSGGGGSGGGRGRHV
RSFTR
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggacactttaacggagcttctttttctggatacgttcaaacatcaaagtgca
gagctgaccaatgtggacgtggtgcggttcccgtgcggtgtcctgatcacagaggtgcgc
gtcattccccctggaattaaagcacacaccagcctgccagacaaccgggcattcggggag
acgtcgcctcattccttccagctggagcttttcttcaacaacctcactaaacccagcaac
gcctgcttccacagactgggcagttttgaatatgacgaaaacaaatccatcattttcagg
cccaatggaaaggtgaatacagatggtctggtactgcgtggttggtacaccagtctgacg
gtggcggtgtacggtacagcggaacggtcacatggtcacgaccgggactctcccccgcct
ccccctcccccacccccccaacaacagactggcctcaagaggatcgtcaaacaagaatgg
gataaggaggaacagtataatggaagtccccccagaccagctcccagaggcccccgcacc
cctcctggaccgcccccaccagatgatgatgatgaggagccagtcccagtgaccgttgga
gtgtccaaggcggagccgactgaaagaggggaggactacctggaagcggtctcacctgaa
cgcggctcactacctgccgacgaaccctactcagatgccgagcctgaggaagagggggag
gaagaagaggacgaggagccggaagaagaggacgacgcacggacggagtgtagcgcccct
gaggatgaggaggaggaagaggaggaagatgagggtgaggaggaggaggaggaaggtgat
gacggttatgagcaaatcagtagtgatgaggatgacttggacaatgggagttttaaggtg
cccagttttgacattgactacacccctgaagacctggcctctgtgcccccagtccagtac
gacccctacgaaagagagctacgcccactgctctacttcacccctccctacaagacccgc
ttcgactcccagctggagagggccaggggggctgtgtgttgtggtccagaggggcctgga
ggtggagagggggcagaggctgaggttgtagcccagatgagagagctcctggctgggata
ggagtggaccgcgactcccgctgggtcacggccctagagcaggcatcagggctgctcgct
agaggtttgggctttctgattgcacagggggaatgggaggagcctattggagctctggtc
caatgggctctccagggtcttagtatggagatagctctgacccaacccattgctctaaac
ctcaggcagctgaaagctggagctaagctggcttcctgcttggctgagtgcccacagggc
ctcactgcgctgctgcacgagggagccctggagctcctactggagctgctccaggtggac
catgtgtcgtccacgctgaagctgtgtatcctgagggctctggatgctctgaccagtgcc
cccgctggtgtggaggccttcctacaggagggggagatggagaggagtggataccagcgg
ttggtgcagctgttcctgggggaggaaaccgtgcgggtggtaaccgcgggcaactccatt
ctgcagaaaggccacgcctatgaggttatgactgacctgcagaggacagcggcagcctgg
agcgagcctctgcaggatgagggggaggagcctgacataccaatggaggaggagccatca
ttaggccactcccctgtcagcgaggctgagctggataggttggctggggttctagaagag
ttacatcaccttctagagactgccccccacaccatggtccagccccctggaaaggccttc
cctacaaccacacgcattactggtccacaggagagagacgacccctaccctacactttac
aggtacatgcatgcatgtcacttcctggagagcacggcggtggcgttgtcagcagcagtg
gcgacggggcatacaggcgtcactcacgcagtcagagaactcctgcacttcctgtctctc
acccaatcaggactgctcttcatgctggcccagcccacgcctaccaacttgctgctccgc
ctcctagcaaccgtcgccgaggctgagggagaggagcctatggtcatcgggggcgacggg
gggttcttgggccccggattgggtgaagagggtttgggggtgtggctgatgcaggcgctg
catgccctccagagtgtttctgagctgatgagtcacgtgactgccggcggggagggaggg
gtggggctagaggagggggacagtgcggaggtactgagcatgctccatgccctctacctc
atcaccttcacacagactgggaggagtgctgtggcccatgtcttcagcctggagaacaac
ctttcctgtctggttacgctgctgcagcaccacagcaaggacggacacggggaggccaag
gcccggaaggcggtgacctataactatgcgtgtatgctggtgctgatggtggttcagaac
tccagtgatctccgtaccatggaacaacacgctgttcctctactcatcctggccaaggct
gatgacaccaacgctaaactacaggagctgagtcagtggctggaacctctggacaaagtg
aagttagagatgggcagcatccccagccttatagactacatcaaacagaacgtcgagaac
gtgttgaccctagagggaagtggactgatgtctgctctgagggccctctgccagatcgcc
tgtccccctcccgccgtagagggtcagcagagagatctgaagtggagtctagcgggggtg
cagttgttttctggggagggcttggacatgtgtgtttgtgtgctccagaagctgtgtagc
gtgttgctgcctgcctggcgtgtgcacggacacatgggacccacgccgcagcgctgtatg
atccttggcatgtgcgcgaacacgctaaggctgctgcggaccatgctgacagagctgctg
cgtagcggggccttccagttcagggacacgcgtgtggcgagcacgttggtgacgctacac
atggtcgtgtgttcagccccggcctctggacgtctagactgggaggagaccaaggttcag
gccctcatcgtagacgtgctgctcaccttcacacagggagtcagcgaacagatgacccac
acagaggagactctgctcagcaacacatggtctctgatgctgaaggaggtgttgggctct
ctactgaaagccccagagggactcttctcaggcctcaccctgctgtctgaactactgcca
ctccccctgcccatgcagagcacacaggtgatctcggtccaggacgtggcggtagcgttg
aacaccaggaagttgtggagcatgcacctgcgggtgcagtggggcatgtttgcggacgcc
ctcgggtgtgtgtgtggaactagctgtccaccgctgctggccatgctgcgacgtgtgtgt
gtgcagctggctgacctctcctctcccaccgccaccctcatcatgaagaccctgctggag
ctactgctgggggaagtacagcctgtggagggtaagagtccgggttgggggcaggtcctg
cgtctcctctctctattcgacaccctggtttcccagagagcctgtaagatcacaacgtta
cacctgctctctggctccgcccccggagacgaaccattgactgatgtcttccccctgcta
ctgtccctattggttccctctgctgaccacgccctgccacaacagcactgtgcagagctg
gtgggatctgtcctgcagtcactgtgtgaccaggacatctctctggtggtgccccaccca
gccgaggggtgtgtgtcggaggccgagcagctggccaatgcccttccaggacgggaaatg
atctcatcagtgtgcgactcgctgctggaggttttggggaacggagagagcagtgccact
ctgctcctcacctgtctcagaacactcatgttcctcacagaacatgactatggactctac
cacctcaaaggagctctgaagaagcacagtgccagtgtgtgtgctctgttgaagagacag
gtgttctccttcaggaaagactctgctgaactcctctctgctctgctggacttcctacga
cagatcctcaacactgaccctctgggttgctgtggggaggagagtggaggggaagagtct
gtgctggtcccgcccccaaggtctgtggctctgactggctcagagatgaaggctctgcta
cagtgggaggagactgacacacaccctctaaatacactagagaaacacatcacgaagctc
tgcaaggaagaggattcattggagaccctgttggagaatgtgattggtctacgacagacg
ctggaaaccactatggatgcatcttctccccctgagacggagcccactctacccaaccct
gacacgctattggcccagttcaaccacaggacagtgtttgtgttgtcggaggtgttggat
gagcagctgaaggctctgtggttctcccccttccacactgacgacatggaggcagaacta
gacatggtgaaggtggacctgctaggcctggcccaggagtgttgtccagagttggacctg
aagtcggagctagaacgctccttcctgtctgagcccttgtctcccagtcacaccaaaact
aacaagggcttcaggctgggcaagcacaaacacgagaccttcatcaccagtggtaagtca
gactacattgagccagctaagagagcccacatgatggctgctcctcgcggtcggggcagg
gggggcttcgggggacagctctgtcgcccccacgacatcttccgccagcgcaaacagaac
acctcgcgccctcccagcatgcatgtggatgactttgtggcggcagagtttaaagacgtt
gggactcccctgggcctgttgccccccaagcgaccccctaagagctcccccaaacccccc
accagaggcctgttcactgggaacagagggagggctgccttccacagccagcagacacgc
tttttcaccccaccgcagcctaaaggagtgctgctgtctggtaactataatgcccgtcgt
gagggtgggcgaggtggctcgtcgtggagtggtccgttgccaccggttacccacagagga
acatatagtgatgccaggggcgggcagagcaacttcacacgcggccccctgccctcacga
cagcagcctgcaggtgcgtatcgcctggctccgcgggaccgcgcccctcgaggtcgtggg
ggtacaggcctgtcgtggctgagtcagggaggaggaggaggaggaggaggggggaggggg
tctcagggggggaagtttagcggtgggggaggcagcggaggggggaggggacgacacgtt
cgctccttcaccaggtaa
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