Coregonus clupeaformis (lake whitefish): 121542679
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Entry
121542679 CDS
T08357
Name
(RefSeq) ATP-dependent translocase ABCB1-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121542679
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121542679
04147 Exosome [BR:
cclu04147
]
121542679
04090 CD molecules [BR:
cclu04090
]
121542679
Enzymes [BR:
cclu01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
121542679
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
121542679
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121542679
CD molecules [BR:
cclu04090
]
Proteins
121542679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
Zeta_toxin
Rad17
AAA_16
RsgA_GTPase
AAA_5
AAA_28
AAA_30
G-alpha
AAA_29
AAA_7
AAA_14
PRK
ATP-synt_ab
RNA_helicase
SbcC_Walker_B
NTPase_1
Abhydrolase_2
Motif
Other DBs
NCBI-GeneID:
121542679
NCBI-ProteinID:
XP_041708099
LinkDB
All DBs
Position
28:6933368..6959307
Genome browser
AA seq
1250 aa
AA seq
DB search
MGKKDEIAVAKAKIEQNGDIGEDKGEGKKKEKEKEPKMPMIGAIALFRFADGWDRLMMVL
GTIMAIVNGTVLPLMYIVFGDMTDSFIRDSIQTQNNFTNITFPVFNTTLGEEMTGHAIYY
SIIGAVVLVAAYMQVAFWTLAAGRQVKRLRKLFFHCIMQQEIGWFDVNETGELNTRLTDD
IYKINEGIGDKVGMLIQSFTTFIAAFIIGFSQGWKLTLVILAVSPVLGFSAFIFSKVLTS
FTCLEQGAYAKAGAVAEEVISSVRTVFAFGGQQKEITRYQKNLEDAMNMGIRKAISANIA
MGFTFLMIYLSYALSFWYGSTLIISGEYTIGTVLTVFFTVLTGAFAIGQTSPNVQAFASA
RGAAHKVYNIIDNKPHINSYSDHGHKPDVIKGNIEFNNIHFTYPSRPDVKVLNGMSLTVR
SGQTIALVGSSGCGKSTTVQLLQRFYDPQEGSVYVDGHDVRSLNVRFLREMIGVVSQEPI
LFATTIAENIRYGRPDITHQEIEQAAREANAYDFIMTLPDKFETLVGDRGTQMSGGQKQR
IAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRQGRTTIIVAHRLSTIRNADVI
AGFQKGEIVELGTHSQLMEKEGVYHTLVTMQTFKSSEEGEEAVEEQVLEEKGASVTPFSE
TTLIRRKSTKGSSFIGSEKGDKDKTEKEEEDEEVPPVSFLKVLKLNLPEWPYMVVGVICA
TINGGMQPLFAVIFSKIIAVFAEQDQELVRQRSSFYSIMFAATGVVSFITMFLQGFCFGK
AGEILTMKLRLMAFKSMMRQELGWYDSHKNSVGALTTRLATDAAQVQGATGVRLATLAQN
VANLSTSLIISFVYGWQLTLLILSVIATEAIENIRTVASLTREQTFESLYQENLIVPYKN
SQKKAHVYGITFSFSQAMIYFAYAGCYRFGAWLIEEGIMTFENVFLVISAVLYGAMAVGE
ANSFTPNYAKAKISASHLMFLINREPAIDNCSQEGETPDHFDGNVRFEGVRFNYPSRPDL
AVLQGLELKVQKGQTLALVGSSGCGKSTTIQLLERFYDPLQGTVILDESDAKKLNIHWLR
AQMGIVSQEPVLFDCSLAENIAYGDNTRKVTMEEIQSAAKAANIHSFIDDLPQKYDTQAG
DKGTQLSGGQKQRIAIARAILRNPKVLLLDEATSALDTESERVVQEALDVARQGRTCIVV
AHRLSTIQNADLIAVFQKGVVVEQGTHQQLLSQRGVYYSLVTTQLGHGRN
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaaggatgagatagccgtggccaaagccaagattgagcaaaacggagacatt
ggtgaggataaaggtgaagggaagaagaaggaaaaggagaaagagccaaagatgccgatg
attggcgccatagctctgttcaggtttgctgatggttgggacaggttgatgatggtgctg
gggaccatcatggccattgtcaatggaacggtccttcctctcatgtatatcgtctttggg
gacatgactgacagcttcataagagactccatacagacacagaataacttcaccaacatc
actttccctgttttcaacaccactctgggagaggagatgactggccatgctatctactac
tctataataggtgcggtggtgttggtagcagcctacatgcaggtggccttctggacactg
gcagcaggcaggcaggtcaagcgcctcaggaagctcttcttccactgcatcatgcagcag
gagatcggctggttcgacgtcaacgagacgggagaactcaacacacgcctaacagatgac
atctataagatcaacgaggggataggggacaaggtgggcatgttgatccagtccttcacc
accttcatcgctgccttcatcatcggcttcagccaaggatggaagctcaccctggtcatc
ctggctgtcagccctgtgctgggcttctctgcttttatattcagcaaggtactgacatcc
ttcacgtgcctggagcagggtgcttatgctaaagctggagccgtggctgaggaggtgatc
tcttctgtcagaacagtcttcgccttcggtggacaacagaaggagataaccaggtaccag
aagaacctggaggatgctatgaacatggggatccgtaaagccatctctgctaacatagct
atgggcttcaccttcctgatgatctacctgtcctacgctctgtccttctggtatggcagc
acactcatcatatctggagaatacaccattggaactgtcctcaccgtgttcttcacagtg
ttgaccggggcgtttgccattggacagacttctcctaatgtccaggccttcgccagcgcc
cggggggcggcacacaaagtctacaacatcatcgacaacaaaccccacatcaacagctac
tcagaccacggccacaagcctgatgtcatcaaaggaaacatagagtttaacaacatccat
ttcacctacccctcacgacccgacgtcaaagtgttgaatggaatgtctctaacggtgcgt
agtggccagaccatagccctggtaggcagtagcggctgtgggaaaagcaccaccgttcag
ctgctgcagaggttctatgatccacaagagggatcagtgtatgtagacggtcatgacgtg
cgctccctgaacgtgcgcttcctgagagagatgattggcgttgtcagtcaggagcccatc
ctgtttgctaccaccatcgctgagaacattcgctacgggcgacctgacatcactcatcag
gagatagaacaggctgcccgggaggccaacgcctacgacttcatcatgacactacctgac
aaatttgagactctggttggagacagagggacccagatgagtggaggacagaaacagagg
atcgctatcgcacgtgctctcgtacgtaaccccaagatcctcttgttggatgaggctacc
tcagcccttgacgccgaaagtgagaccatcgtacaggctgctttggacaaggtgagacag
ggtcgtactaccatcattgtggcccatcgtctgtctactatccgtaatgctgatgtcatc
gccggcttccagaagggagagattgtagagctgggaacacacagccaactgatggaaaaa
gaaggagtctaccacacactggtcaccatgcagacgtttaagagttctgaggagggcgaa
gaggcggtggaggagcaggttctggaggagaagggtgcgtcagtgacgccgttctcagag
accaccctcatcaggaggaagtctaccaagggatcatccttcatcggctcagagaaagga
gacaaggacaagactgagaaggaggaagaggatgaggaggttcctcctgtgtcgtttctg
aaggtgttgaagctgaaccttcctgagtggccctatatggtggttggtgtgatctgtgcc
actatcaacggaggcatgcagcctctcttcgctgtcatcttctctaaaatcatcgctgtg
tttgcagagcaagaccaagaactggttagacaacgctcctccttctactctatcatgttc
gccgccactggagtcgtctccttcataaccatgttcctacagggattctgttttgggaag
gctggtgagattctgaccatgaagctgagactgatggcctttaaatccatgatgagacag
gagttgggctggtatgacagtcacaagaacagtgttggagctctcaccactagactggct
acagacgcagcacaagtacagggggctacaggagtgcgtttggccactctggcccagaac
gtggctaacctgagcaccagtctgatcatctcgtttgtgtacggctggcagctgactctt
ctcatcctgtctgtgattgccacagaggccatagagaacatccgtacggtggcttctctc
accagagagcagacatttgagtctctgtaccaggagaacctcatagtgccttacaagaac
tctcagaagaaggcccatgtgtatggcatcacattctccttctctcaggctatgatctac
tttgcctatgccggctgctaccgcttcggagcctggctcatagaggaaggcattatgacc
ttcgaaaatgtcttcctggtgatctctgcagtgctgtacggagccatggcagtaggagag
gccaactcctttacgcctaactacgccaaggccaagatatcagcatctcaccttatgttc
ctcatcaacagagaacctgccatagacaactgctcacaagagggagaaacaccggaccac
tttgatggtaacgtgcgtttcgagggggtgaggttcaactacccgtcccgtccagacctt
gctgtcctgcaggggctggagctgaaggtgcagaagggacagactctagccctggtgggc
agcagtggctgtgggaagagtaccaccatacaattactggagcggttctacgacccacta
cagggcacagtgatattggacgagagtgatgctaagaagcttaacatccattggctgagg
gcccagatgggcatcgtatcccaggagcccgtgctgtttgactgtagtctggcagagaac
attgcctacggagacaacacacgcaaagttaccatggaggagatccagagtgctgctaaa
gctgccaacatacacagcttcatagacgacctgcctcagaagtatgacacccaagccggt
gacaaggggacccagttgtcaggaggtcagaagcagcgtatagccatcgccagagccatc
ctccgcaaccccaaagtcctgctgctggacgaggccacctccgcactggacacagagagc
gaaagggtggtgcaggaggcactggacgtggctcggcagggcaggacatgtatcgtggtg
gcccaccgcctgtccaccatccagaacgctgacctgatcgctgtcttccagaagggtgtg
gtggtggagcagggcactcatcaacaactactgtcccagagaggagtatactactcactg
gttaccacccagctgggccatggcagaaactga
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