Coregonus clupeaformis (lake whitefish): 121555784
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Entry
121555784 CDS
T08357
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121555784 (upf3a)
03015 mRNA surveillance pathway
121555784 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121555784 (upf3a)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121555784 (upf3a)
mRNA cycle factors
P-body specific factors
121555784 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
121555784
NCBI-ProteinID:
XP_041725557
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All DBs
Position
40:complement(28076185..28104172)
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AA seq
358 aa
AA seq
DB search
MMICLYVKKKKLKKKDAKAGSIEEDLEYRRFLESYSCDEEKSMANPETLLGEIEAKTKKL
IAKRTTPLREYIKNKKLEKQRIREEKREERRCRELEKKRLREEEKRKRREEERRKREADK
QKKLSEKEIKIKLLKKSDRDDDVDSDRLKDKGDSGDTERAKWDKPSGHMKSKETKDKVPM
ESDKEQREHGRRQRDKDHRRRDEERKRQRHHYEFDKFMRCKEETKWGKGYCQDRAKKDGH
HHSSYSYCPNTGDKEDREDIGGSRKDRVWNKVSDKSVLAYQDRGTSQSEGPHQIGGPLPN
KDRPAMQLYQPGAHNRKRMGSAIKGYELPVSHSPEHGPADRCYEAIAMGTGSEMSGDK
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgatgatctgtctctatgtcaagaagaagaagctcaaaaagaaagatgccaaagctgga
agcattgaagaagacctggagtaccggcggtttctggagagctactcctgtgacgaggag
aagtccatggccaaccctgaaaccctgctgggagagatagaggccaagacaaagaaactc
atagccaaaagaacaacacctcttcgggagtacatcaagaataagaaacttgagaagcag
aggataagagaggagaagagagaggagcggcgatgcagggagctggagaagaaacgcctg
agggaggaggagaagaggaagaggagggaggaggagaggcgcaaacgcgaggcggataaa
cagaagaaactatcagagaaggagataaagatcaagctcctgaagaagagtgaccgggac
gatgacgtggactccgacaggctcaaggacaaaggagacagtggggacacagagagggcc
aagtgggacaaacccagtggacacatgaagtcaaaggaaaccaaggacaaggttccgatg
gagagcgataaggaacagagagagcatggccgcaggcagagagacaaagaccacagaaga
agagacgaggagagaaaacgacagcgccaccactacgagttcgacaagttcatgcggtgc
aaggaggagaccaagtggggtaaaggctactgccaagaccgggccaagaaagatggccac
caccacagctcctattcctactgccccaacacgggcgacaaggaggacagagaggacatt
ggcggtagcaggaaggaccgtgtctggaacaaggtgagcgacaagtctgtgttagcctat
caggacagagggacgtcccagtcagaggggccacaccagataggaggacctctgccaaac
aaggaccggcctgccatgcagctctaccagccaggcgctcacaatcgcaagcgcatgggc
tctgcgattaaaggttatgagctccccgtcagccactcgccggaacacgggccggcggac
cgctgctacgaggccatcgccatgggaacaggctcggaaatgagcggcgacaagtag
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