Coregonus clupeaformis (lake whitefish): 121558692
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Entry
121558692 CDS
T08357
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X4
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121558692 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121558692 (ddx3xb)
03041 Spliceosome [BR:
cclu03041
]
121558692 (ddx3xb)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121558692 (ddx3xb)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121558692 (ddx3xb)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121558692 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
121558692 (ddx3xb)
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121558692 (ddx3xb)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121558692 (ddx3xb)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
121558692
NCBI-ProteinID:
XP_041728033
LinkDB
All DBs
Position
20:complement(61225736..61244169)
Genome browser
AA seq
728 aa
AA seq
DB search
MSHVAVENIHGLEQQLAVLGLNNADGQGGGTGRTCYIPPHLRNQEASKNADAFSRPSAFS
MAPRSYALGGWDGGRNNGFVQNGYHDNRMNGGNRYNSGPPRMERGRGGGGFRGGRGGSYN
PVQPMQNAGVFGVYDNKDGGGWNTAKDAYTSFSARPDRGKSAFFNNGGSASRGSYQRGGF
GGSGNGRWVEESRDDEDWSKPTQANERLEQELFAGGNTGINFDNYDDIPVEATGQNCPHH
IDSFQDIEMGEIIMSNIALTRYNRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAFLLPV
LSQIYTEGPGEAVVAQKSGGQDNGKYGRRKQYPLALVLAPTRELALQIYEEARKFAYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEDGDKRSFLLDLLNATGKNSLTLVFVETKKGADALEDFLYREGYACTSIHGD
RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR
VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSNTRGRSKRFSSG
GFGARDYRQTSGGGSTGGFGGRGGRQPGGHGGNRGFGGGGGGFGGNFYSSDGYGGNYSHQ
GGVDWWGN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatatacacggtctagaacagcagcttgctgtcctaggc
ttgaacaatgctgacgggcagggcgggggcactggcaggacctgttacattccacctcat
ttacggaaccaagaggcttccaaaaatgcagatgctttctctagaccgagtgctttttca
atggcaccaagaagctatgcgcttggaggttgggacggcggacgcaacaacggctttgtg
caaaatggttaccatgacaaccgcatgaatgggggcaacaggtacaacagcggcccgcct
cgcatggagagaggcaggggcggcggaggtttccgcggcggcaggggcgggtcctacaac
ccggtccagcccatgcagaacgctggcgtgttcggcgtctacgacaacaaagatggcggc
ggctggaacacggctaaagacgcctacaccagcttcagcgcacgtcccgacagggggaag
tctgctttcttcaacaacggcgggagtgcgtcccgaggaagttaccagcgtggagggttc
ggaggcagtggaaacggacgctgggtggaggagtccagggatgacgaggactggtccaaa
cccactcaggccaatgagcgcctggaacaggagctgttcgctggaggcaacacagggatt
aactttgacaattacgacgacattcccgttgaggccactggccaaaactgcccccatcac
attgacagcttccaagacatagagatgggagagatcatcatgagtaacattgccctgacc
cgctacaatcggcccactccggtccagaagtacgccattccaatcatcaagaacaagagg
gacctgatggcctgcgcccagacaggttctggtaagactgcagcattcctgttgcctgta
ctgagtcagatctacactgaagggccaggagaagctgtggttgcccagaagtctggagga
caggacaatggaaagtatggtcgccgtaagcagtaccccctcgctctggtcctggccccc
accagagaactggccctgcagatctacgaagaggccagaaagtttgcgtaccggtcccgt
gtgcgtccctgtgtggtgtacggaggggctgacatcggccagcagatcagagacctagag
cgaggctgtcacctgctggtggctacacctggacgccttgtggacatgatggagagaggc
aagattggcctcgactactgcaactacctggtgctggatgaggctgaccggatgttggac
atgggttttgagccccagatcagacgcattgtggagcaggacaccatgccccctaaaggt
gttcgccagaccatgatgtttagcgctaccttccccaaggagatccagatcctggcgcgt
gacttcctggaggagtacatcttcctggcggtgggacgcgtgggctccacctccgagaac
atcacccagaaggtggtgtgggtggaggacggtgacaagaggtccttcctcctggacctg
ctcaacgctacaggtaaaaactctctgacactggtgtttgtggaaaccaagaagggagcg
gacgccctggaggacttcctgtaccgcgagggttacgcctgcaccagtatccacggcgac
cgctcccagagggaccgagaggaggctctgcaccagttccgctcgggacgctgccccatc
ctggtcgccacggcagtggctgcccgtggcctggacatctccaacgtgaagcacgtcatc
aactttgacctgcccagcgatatagaggagtacgtccaccgtataggccgtactggacgc
gtgggcaacctgggtctggccacatcgttcttcaacgataagaacggcaacatcaccaag
gaccttctggacatcctggtggaggccaaacaggaagtaccctcctggctggagagcctg
gcctatgaacaccagcacaagagcaacacccgcggacgctccaagaggttcagctctggt
ggcttcggagccagggactaccgtcaaaccagtggcggcggcagcactggagggttcggg
ggtcgcggtggacgccagcccggtggacacggaggaaaccgtggattcggcggcggcggt
ggtggctttggaggcaacttttacagcagtgatggctatggaggaaactactctcatcag
gggggagtggactggtggggcaactaa
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integrated database retrieval system
