Coregonus clupeaformis (lake whitefish): 121559116
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Entry
121559116 CDS
T08357
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121559116
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121559116
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121559116
BRITE hierarchy
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
121559116
NCBI-ProteinID:
XP_045074845
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
SQGSIILDVVGRRSQYVSSVLDVVGRTSQYVSSVLDVVGRRSQYVSSVLDVVGRRSQYVS
SVLDVVGRRSQYVSSVLDVVGRRSQYVSSVLDVVVRRSQYVSSVLDVVGRTSQYVSSVLD
ETSSYSCTGLRHFYLFPVQVNGRDYSKASHDEVVEVIRRDPIVVQVVRHHGNPAHAHQTF
KEVHVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHTMEHEFYECPEY
LSNTPAEVDMPDEFEYEQVELCRLNSQEKLGLTLCYRTDDEEDTAIYVSHVGPNSIAARD
GRIREGDRILQINGCDVQDRQEAVALLSSEESRSIVLLVTRPEEAWLDEEHNEVLEELKM
EILEERRNEEAQKTGGGEEQAKQLEEDDVMTDTATCSSNTQDKDSGMGTGRNEESSEQEV
LLARVHRRPAQGLRDRWRAEHGQGLGRRVVPSDTPGPRGLIQAQDGEGGVGLGLECDSRF
QQLVELKCQIRNGGECGVYYSRRSTMECSLTEQSGVGVSDGGGMEQELRMLNEELRSIEL
ECQSIMQAHQLRKTKRDPPCAPICSPGRSPKDGRKRHAKLADINEHPGERPWDSDKLRGD
KDSSSAYNTAESARSTPLGMERSPDHSLQRRISLTNQKNLQSTMAASGQSISIPIPDREL
QSGTSTGHSRQDPNPSPGTTVISSSPDQSNPSPSESDPALPADDERCDRTRSHRGPPKVP
TYPSPYHTAPQQGQGASPAHARHLQSYMQQLLQQTSSLETYSQSQLSLLSVCRERSGRPG
EPRLEWKVKVRADGTKYVTRRPARDRILRERALRIREERSGGMTTDDDAMSEMKMGRYWS
KEERKQQLARAREQRRRREYMQRSRLECLREGPGSGAEGRKEVNILELSHKKMMKKRNKK
ILDNWMTIQELMSHGARAPEDQGTKQVHNAFLSVTTV
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
tcccaggggtccattatactggatgtggtgggtaggaggtctcagtacgtcagctcagta
ctggatgtggtgggtaggacgtctcagtacgtcagctcagtactggatgtggtgggtagg
aggtctcagtacgtcagctcagtactggatgtggtgggtaggaggtctcagtacgtcagc
tcagtactggatgtggtgggtaggaggtctcagtacgtcagctcagtactggatgtggtg
ggtaggaggtctcagtacgtcagctcagtactggatgtggtggttaggaggtctcagtac
gtcagctcagtactggatgtggtgggtaggacgtctcagtacgtcagctcagtactggat
gagacttctagttattcctgtacaggtttgagacacttctatctcttccccgttcaggtg
aatggcagggactactccaaagccagccatgatgaggtggtggaggtcatcaggagagac
cccatcgtggtgcaggtcgtccgtcaccatggcaaccccgcccacgcacaccaaacattt
aaggaggtgcacgtggtggacgtgtgcacgcagactgacatcaccttcgaacacatcatg
gccctggctaagctgagacctgctactccacctgtacccgacatctgccccttcctgctg
tcagacagctgtcactccatccacaccatggagcatgagttctacgagtgtccagagtac
ctctccaacaccccagctgaagtggacatgccagatgagtttgagtacgagcaggtagag
ctgtgccggctcaacagtcaggagaagttgggtctgacgctgtgctatcggactgacgat
gaagaggatacagctatctacgtcagccacgttggacccaatagcatcgctgccagggat
gggcgcattagggaaggagatcgaatattacagatcaacggctgtgacgtacaggacagg
caggaagctgtcgctctcctgtccagtgaggagtccaggagtatcgttctcctggtgacc
agaccagaggaggcgtggcttgatgaggagcacaatgaagtccttgaggagctgaagatg
gagatcctagaggagaggaggaacgaggaggcgcagaagacaggaggaggagaggagcag
gccaagcagctggaggaggatgacgtcatgacagacacggccacgtgttcgtccaatact
caggacaaagacagcggtatggggacggggcgcaacgaggagagctccgaacaggaagtc
ctcctagcccgtgtacatcggaggcctgcccagggcctgagagaccgatggagggccgag
catggccaggggctgggcaggagggtggtgccctcggacaccccgggacccaggggtctg
atccaagcccaggacggcgagggcggagtggggttaggactggagtgtgacagccgcttc
cagcagctcgtggagctcaagtgccagatccgtaacggcggggagtgtggtgtgtactac
agcaggagaagcaccatggagtgcagcctgacggagcagagcggggtgggggtcagtgat
ggaggagggatggaacaggagctgaggatgttgaacgaggagctgaggagtatcgagctg
gagtgtcagagcatcatgcaggcccaccagctccgcaagaccaagagggaccccccctgc
gcccctatctgctccccaggacggagccccaaagacgggcgtaagcggcatgccaagctg
gccgatatcaacgagcatccaggggagaggccgtgggacagcgacaagctaaggggggac
aaggacagctccagtgcctataacacagctgagagcgccaggtccactcctctaggcatg
gagagatccccggaccactctctacagagacgcatcagcctcaccaaccagaagaacctc
cagagtacaatggcagcctccggccagtccatctccatccccatcccagacagagagctc
caaagtgggacctcgactgggcacagccgacaggatcccaaccccagcccaggcaccacg
gtcatctccagcagccccgaccagtccaacccctccccctccgagtcagacccggccctg
cctgcagacgacgagcgctgcgaccgcaccaggagccaccgggggccacccaaggtccct
acctacccatccccctaccacacagccccccagcagggccagggcgcctctccggcccac
gccagacaccttcagagctacatgcagcagctcctccagcagacctccagtctggagacc
tactcccagtcccagctcagcctcctcagtgtctgccgggagcgctccggccgcccgggg
gaaccacgcctcgagtggaaggtcaaagttcgagccgacgggacgaagtatgtaacccgg
cgcccggcgagggaccgaattctacgagaacgggcgctgaggatcagggaggagcgtagt
ggagggatgaccacggacgacgacgctatgtccgagatgaagatggggcggtactggagt
aaagaggagaggaagcagcagctggccagagccagggagcagaggaggaggagggagtac
atgcagaggagccggctggagtgtctcagagaggggccggggagcggggccgagggccgt
aaagaggtcaacatcctggaactcagccacaagaagatgatgaagaaacgcaacaagaag
atcctggataactggatgaccatccaggaactaatgagtcacggggccagagcacctgag
gaccaggggactaaacaagtacacaatgccttcctgtctgttactacagtatag
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integrated database retrieval system
